Pairwise Alignments

Query, 315 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 50/187 (26%), Positives = 71/187 (37%), Gaps = 53/187 (28%)

Query: 44  IIRELPIAEGEHVKVGDVLVKLDSQIQTTLLTQALAQQAKAQASLNKLTNGERPEDIAVA 103
           IIRE+P  EG  VK GDVL +++       + QA A  AKA+AS            +  A
Sbjct: 77  IIREIPFKEGSEVKQGDVLYQIEDNTYLAEVAQAKASVAKAEAS------------VPSA 124

Query: 104 QARVAKARAQHKEAELTLNRKAELVAKQLISQSEVDAARSARDSAQAELASAHEEFTKLT 163
           QA +A               + E +     +Q E + A+     AQA             
Sbjct: 125 QANLA---------------RYERLVNSGATQIEYENAKVTLLQAQA------------- 156

Query: 164 AGARIEDIEQAKAELAVAQANVTLQQQKLDELTILATRDGILDSLPYHLGERVANNAVVA 223
                 D+ Q KA L  A+ N       LD   + A  DGI  +  + +G  V  N   A
Sbjct: 157 ------DVAQTKAALETAEIN-------LDLTKVRAPFDGITSATAFSIGNVVTANQTTA 203

Query: 224 IVQADRL 230
           +    R+
Sbjct: 204 LTTLRRI 210