Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1052 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  191 bits (485), Expect = 3e-52
 Identities = 177/575 (30%), Positives = 270/575 (46%), Gaps = 75/575 (13%)

Query: 621  YLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR 680
            +L + +D+T   E   AL ++ + A  A +A++ FLA +SHE+RTP+  +LG +E+L   
Sbjct: 455  WLCVVHDVTRHIEDAAALEEARQAADSASQAKSRFLATMSHEIRTPLYGVLGTLELLGLT 514

Query: 681  LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 740
              +   Q  L     S+  L   ++D+LD SKIEA Q+ L++  +   +     +R + A
Sbjct: 515  SLAPRQQDYLQTIQRSSTTLFQLISDVLDVSKIEAGQMTLELQDFCPLELTEDCVRTYGA 574

Query: 741  SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKI------DV 794
             A+ K ++       N       D LR  QI+ NLLSNAIKFTD GRVV ++      D 
Sbjct: 575  FARSKGLQLYACIDANLPDRLRGDPLRIRQILNNLLSNAIKFTDNGRVVLRLRGLETSDG 634

Query: 795  APEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854
              E L   V D+G G+ Q Q   LF PF QA+     R  G GLG++I   L ELM+G++
Sbjct: 635  RVE-LQWQVSDSGVGIAQAQQHQLFDPFYQAED--ATRQAGAGLGLAICKWLCELMHGQL 691

Query: 855  EVKSEFEQGTQ--IQVNLPLVTQT---CDEFRGQVVAMSYRSP-------YMLWAKALGM 902
             V SE   G+   +QV L  V  T   C  F     A+  R+P        + W K LG+
Sbjct: 692  NVVSEPGLGSSFTLQVALEPVPGTLADCPVFSPDTPAVYVRAPEAERTQCMIDWLKRLGL 751

Query: 903  --RVEENEE-----WVEQSGHNIYPDLLL---------------------NRLREVS--- 931
              RV   +       V+ +    +P   +                     N +R ++   
Sbjct: 752  DSRVFAADTPAAALLVDFTHDPAWPGTRIIASAGGPSPAQPYGSDWAVDANDVRAIAWAV 811

Query: 932  NLTQAQTEPAH-------SRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAF 984
             L Q   E  H       +R L   VLVA+D+ IN  +I++QL  LG S  L SDG QA 
Sbjct: 812  YLAQHGAEADHRPAPPTQARPLNLQVLVAEDNVINAAIIQEQLEALGCSVVLTSDGEQAL 871

Query: 985  EKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQA 1044
             +    P ++DL++TD +MP ++G+ L   ++++ +     ++G TA   R   E     
Sbjct: 872  TQWL--PGRFDLVLTDVNMPVMNGYQLAEALRRQDATL--PIIGITANAMREEGEHCTAV 927

Query: 1045 GMDKVIYKPYTLANLRKVLSRYLTTQWVALPEQSWLDAYQEEEREEMAMVVAESLAQDI- 1103
            GM+  + KP  LA LR  L ++   +  A+ +   L         +M  +   +L QD+ 
Sbjct: 928  GMNGWMVKPLNLATLRAQLEKHCKIEVPAVVDMPPLS-------PKMRELFVTTLRQDVH 980

Query: 1104 ----ALLNQPDCDVKALAHRIKGAAGSLQLQRLAD 1134
                AL NQ         H + GA G++QL  LA+
Sbjct: 981  TTLAALDNQDASGTAQQLHSMAGALGAVQLVDLAN 1015