Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  232 bits (592), Expect = 1e-64
 Identities = 285/1221 (23%), Positives = 525/1221 (42%), Gaps = 144/1221 (11%)

Query: 7    LDPNEQAYVEQKSTVTIAVLKEIWMPYWGGTGQEPIGIEHDFASGIAKELGINIEYKGFD 66
            LD ++  ++ Q+ T+ + V    + P+     ++  GI  D+A  I+  L + IE + +D
Sbjct: 46   LDESDWRWLRQRRTLVMGVSAPDYAPFDLSNNKDFEGITADYAWLISLILSVPIEVRRYD 105

Query: 67   TIEALLNAVSTGKADMAIGFGQTLAREGKFLFSKPLYENVRVIWLR---DKAMEEKPFAS 123
            T + ++ A+  G+ D+ +G         K L     Y N + + +    D  +     A 
Sbjct: 106  TRDEVIEALKLGQVDL-VGSANGYEAADKGLVLSRSYANDQPVLITRAGDSHLLSADLAG 164

Query: 124  LKWVCIQGTSYCEILKDRGYPN--IIMARNYSSSVEMIRQGIADATVTNYVSLNHYLSQK 181
             +   +      + ++   YP   +++  +   ++  +  G AD  + + +S  + + + 
Sbjct: 165  KRVAMLYHYMQPDAVQAY-YPKAQLLLYGSTHQAIGSVAFGQADVYLGDIISARYLIKKN 223

Query: 182  RLALGKVIFDPDLGVQTNRILINNNEPLLLSAINK---VIDADKQGLTENKLNSADVYFL 238
             L   ++     L V         +   LL+ IN    VI A +Q     + ++AD   L
Sbjct: 224  HLNNIRMADFSGLEVNPFGFAFTADNIRLLNIINAALAVIPASQQMSILRRWSAADSGVL 283

Query: 239  N-DQANLNILRNE--NVNPVVRYTIQDDLFPMSYWDEKEKKYKGYVHDLLERISTKSILK 295
              D+  L+         +P V+  + D   P+S+ DE+ + + G   ++L RIS ++ LK
Sbjct: 284  EADRLRLSDSEQRWLEKHPRVKVAVLDKFMPLSFLDERGQ-FVGLSDEVLSRISLRTGLK 342

Query: 296  FEFVPAYGRDVE---DMLRHGKVDLIPSFNMTYVDDRYFIHTGRYTDIQFGYIETTRPYT 352
            FE V  +G  +    D +  G+ D++     +         T  Y  +   Y+   R   
Sbjct: 343  FEMV--HGNSLTRQIDEVSSGQADMLAVITPSVERAEKVRFTRPY--LSNPYVLVARASD 398

Query: 353  TPITGILDRTGKFNAYIA-------VQKNLSDVKVYRSMYDLEQALE---KGDITHGLLN 402
              +  + D  GK  A+I        + ++   ++ +  + + E A++   KG +   +++
Sbjct: 399  ERLLTLEDMPGKRLAFIGGNSLGAQIARDYPGIQ-FVDVGNPEAAMDLVAKGSVDATIVS 457

Query: 403  KVLINQMLLDGHQDAFKLSPLTEGQDLRADMTMLVRKDARGLQNMLQKVLATFSQQEIDE 462
             +    M+   ++D  +++     +  R  +   V +    L ++L+K L + + +E+DE
Sbjct: 458  LISARYMIARNYRDRLRITSTIGTEPAR--IAFGVNRSQLELYSILEKALLSITPEEMDE 515

Query: 463  IKGAYDRVTVY---FGYDKQKVLI--YALIILCALLSIGLILTLSLSRLRGKLRSSEQVA 517
            +   +    +    +    + V+I  + L  L  L+++G +L L     R  +    Q  
Sbjct: 516  LSNRWRSEIIIDDSYWSSHRNVIIQGFGLAALLLLVTLGWVLYL-----RNLIHKRAQAE 570

Query: 518  KLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCE----KGCVQ----- 568
            +  ++Q+R+++ L+D  P  I++ D +G ++  N AY  ++    E    K  VQ     
Sbjct: 571  QALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFKLEDVIGKTVVQTDTGN 630

Query: 569  -PQPE---CSFLALPDQHEAEFSI-IIQAPKSNCSIGEHYFHVTRRAISHPINQRKYYLT 623
             PQ +     +L+L ++ E +    +++ P         +    R +    +     ++ 
Sbjct: 631  PPQAQSFHADYLSLMERGEPQIQDRVLKVPGGGVLTIYQWMLPYRDSNGAVVGMIAGWV- 689

Query: 624  LFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKS 683
               D++E +     L+++ E+A  A  A+  FLA +SHE+RTP+ A++G++E+     + 
Sbjct: 690  ---DVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQ 746

Query: 684  SESQLLLTNAISSAERLKLH-VNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASA 742
                       S A R  L  + DILD ++IE   L L +   NL + L  + R FE  A
Sbjct: 747  GRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLSLEQANLHELLASVARVFEGLA 806

Query: 743  QLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEM---- 798
            + K +   V   P        D LRF Q+V+NLL NAIKFT  G+V       P +    
Sbjct: 807  RDKGLLLQVELDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTATGQVRLGAQSTPTLAGDH 866

Query: 799  --LTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEV 856
              L + VEDTG G++    + LF PF Q  +       G+GLG+ I  NL E+M G++ +
Sbjct: 867  LSLRLCVEDTGIGISAEDQQRLFSPFIQGSNNDQSARSGSGLGLVISRNLCEMMGGQLHL 926

Query: 857  KSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGH 916
             S   +GT++ + L L T T       V A +  +P      AL + V ++         
Sbjct: 927  SSVLGKGTRVDLTLTLATATAT----PVYAPAPPAPA---THALNLLVVDD--------- 970

Query: 917  NIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATL 976
              YP   L   R++S L              GH +V  +D                   L
Sbjct: 971  --YPANRLLLARQLSFL--------------GHRIVTAEDGAE-------------GFAL 1001

Query: 977  VSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVK---QEISLFKGAVVGCTAED 1033
              DG            Q+D +ITD +MP +DG+ L R ++   ++  L    ++G TA  
Sbjct: 1002 WQDG------------QFDGVITDSNMPIMDGYTLARDIRAQERQRGLVPCLLLGFTANA 1049

Query: 1034 SRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTT----QWVALPEQSWLDAYQEEER- 1088
                 E+  QAGMD  ++KP  L +LR  L+         + V + + S L A    +  
Sbjct: 1050 QPEETERCRQAGMDGCLFKPTGLDDLRTALASRTAAPEEKEVVPVCDLSTLVALTGGDTA 1109

Query: 1089 --EEMAMVVAESLAQDIALLNQPDC-----DVKALAHRIKGAAGSLQLQRLADLAKTVE- 1140
               E+   + +SLA+D  +L+          +  LAHR+KG A  ++ Q L    +T+E 
Sbjct: 1110 GLNELLAPLLDSLAEDRLVLSTLRARTDFGKLHDLAHRVKGGARMVKSQALVACCETLED 1169

Query: 1141 --KQNDPQQLVADKQQLINAM 1159
              ++ D   L A    + +AM
Sbjct: 1170 VCERRDRDALAATVDAIGHAM 1190