Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1215 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  258 bits (658), Expect = 3e-72
 Identities = 287/1199 (23%), Positives = 530/1199 (44%), Gaps = 138/1199 (11%)

Query: 7    LDPNEQAYVEQKSTVTIAVLKEIWMPY-WGGTGQEPIGIEHDFASGIAKELGINIEYKGF 65
            +D  ++ +++ K  + +      + P+    +G +  GI  D+A  +AK L + +  + +
Sbjct: 51   MDATQRRWLQNKRELILGTAAPDYPPFDITSSGYDYEGITADYAGVLAKALALPVRVQRY 110

Query: 66   DTIEALLNAVSTGKADMAIGFGQTLAREGKFLFSKPLYENVRVIWLRDKAMEEKP--FAS 123
             T EA + A+ +G+ D+        A       S P   +  V+  R+          A 
Sbjct: 111  PTREASIQALESGEIDLLGSSNGFEATHPLLTLSAPYAVDQPVLVTREGETRSLSDGLAG 170

Query: 124  LKWVCIQGTSYCEILKDRGYPNIIMAR--NYSSSVEMIRQGIADATVTNYVSLNHYLSQK 181
            L+   +      E ++ + YP  I+    +Y +++  +    AD  + + +S ++ +++ 
Sbjct: 171  LRLSLVYHYLPLEEVQ-KLYPKAIIRAYPSYQNALNAVAFDQADVFLGDTISTHYMINKG 229

Query: 182  RLALGKVIFDPDLGVQTN---RILINNNEPLLLSAINKVIDA----DKQGLTENKLNSAD 234
             L   K I   + G          +  ++P+LL+ +N V+ A    +++ + +     +D
Sbjct: 230  YL---KNIHMANFGKHEAYGFSFALRQDQPILLNIVNAVLAALPTHERENIAKRWSAGSD 286

Query: 235  VYFLNDQANLNILRNEN---VNPVVRYTIQDDLFPMSYWDEKEKKYKGYVHDLLERISTK 291
            +  L DQ      R E     +PVV     +   P++++D  +  ++G   DLLE I  +
Sbjct: 287  I-LLTDQKLQLTQREERWLKAHPVVTVIANETFAPLTFFDA-DGNFRGITADLLELIRLR 344

Query: 292  SILKFEFVPAYGRDVEDMLRH---GKVDLIPSFNMTYVDDRYFIHTGRYTDIQFGYIETT 348
            + L+FE     GRD+  M+     GKVD+I +   +   +     +  Y  ++  Y+  T
Sbjct: 345  TGLRFEI--QRGRDINAMIEQIDTGKVDIIGAIVPSSERETQLNFSRPY--LENSYVLLT 400

Query: 349  RPYTTPITGILDRTGKFNAY-------IAVQKNLSDVKVYRSM--YDLEQALEKGDITHG 399
            R        +    GK  A        + ++K+   +++  +   +   + L +G +  G
Sbjct: 401  RKEPDAPLNLEQMAGKRLAITQGNPLEVTLRKDFPHIQLVETSDTFKAAELLAQGHV-EG 459

Query: 400  LLNKVLINQMLLDGHQDAFKLSPLTEGQDLRADMTMLVRKDARGLQNMLQKVLATFSQQE 459
             +N +++   LL  H    +L   T    L A   +   +DA  L ++L K L + +  E
Sbjct: 460  AVNSLVVANYLLSSHVFQDRLQIGTSIGTLPALFALATSRDATELSSILDKALLSIAPDE 519

Query: 460  IDEIKGAYDRVTVYFGYDKQKVLIYALIILCALLSIGLILTLSLS---RLRGKLRSSEQV 516
            +  I     R   Y          Y  +I   ++  GL+L +SL+    +R +++     
Sbjct: 520  LGVINS---RWRGYTAASDSYWRDYNDLIAQIIIGTGLLLLISLAWNAYMRRQIQHRRMA 576

Query: 517  AKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEK--GCVQPQPECS 574
             +   +Q  ++  L++  P  I++ D  G +   N +Y +++    E   G    Q   +
Sbjct: 577  ERALNDQFEFMRALVNETPHPIYVRDRNGLLQTCNDSYLQVFDVKREDVIGKSALQISTA 636

Query: 575  FLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAIS---------HPINQRKYYLTLF 625
                  Q+ A++  ++   + N  I +   H+  + ++             + +  +  +
Sbjct: 637  LETEASQYHADYQRVVA--QGNPLIVDRPLHIRGKKLTIYHWILPYRDSTGEVQGIIGGW 694

Query: 626  NDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSE 685
             DI+E ++    LR + E+A +A  A++ FLA +SHE+RTP+ A++G++E+   R     
Sbjct: 695  IDISERRQLFDELRAAKERADEANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRADQGH 754

Query: 686  -SQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQL 744
              +  +  A  SA+ L   + DILD ++IE+ +L L     NL D +  ++R F+  A+ 
Sbjct: 755  LDRPAIEVAYHSAKDLLELIGDILDIARIESGRLSLSPERVNLKDVIESVVRVFDGLARQ 814

Query: 745  KEIEFDVIWSPN----SLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV----AP 796
            K +   + + P      +L+   D LRF Q+++NL+SNAIKFT++G V  K++V     P
Sbjct: 815  KTLSLLLEFKPGLDDTDVLI---DPLRFKQVLSNLVSNAIKFTERGEVKVKVEVHATDLP 871

Query: 797  EM--LTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854
            +   + +VVEDTG G+++     LF PF+QAD++      G GLG+ I  +L  +M G++
Sbjct: 872  QQVEMKLVVEDTGIGISREDQLRLFEPFSQADNSGHLARSGAGLGLVICRSLCAMMGGQL 931

Query: 855  EVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQS 914
             + S    GTQ+ V+L +                                          
Sbjct: 932  SLSSVPMVGTQVYVSLKM------------------------------------------ 949

Query: 915  GHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSA 974
             H++ P      +  V     A   PA       +VLV DD   NRLL+ +QL  LG   
Sbjct: 950  -HSLQP------VHAVEEPKPATPTPAPVL----NVLVVDDHPANRLLMCQQLGYLGHQF 998

Query: 975  TLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVK---QEISLFKGAVVGCTA 1031
            T    G   F+   Q  E +DL+I DC+MP ++G+ L+R ++   Q   L    ++G TA
Sbjct: 999  TAAQHGAAGFQAWRQ--EHFDLVIADCNMPIMNGYELSRSIREYEQREQLPPCVILGFTA 1056

Query: 1032 EDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTTQWVALPEQSWLDAY-----QEE 1086
                    +  +AGM+  ++KP +L  L + L++        L + S LDA      Q  
Sbjct: 1057 NAQPEEKRRCAEAGMNDCLFKPISLTILERQLAQIGPHPTSTLLDLSSLDALTGGDPQLS 1116

Query: 1087 ER--EEMAMVVAESLAQDIALL--NQPDCDVKALAHRIKGAAGSLQLQRLADLAKTVEK 1141
             R  EE+    A    + IAL+    P  D+   AH+IKGAA  +Q   LA   + +E+
Sbjct: 1117 RRLLEELLSSSAHDRQEIIALVARQAPLQDIIEQAHKIKGAARIVQASVLAAQCEALEQ 1175