Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (475), Expect = 5e-51
 Identities = 158/555 (28%), Positives = 259/555 (46%), Gaps = 79/555 (14%)

Query: 522  EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQPECSFLA-LPD 580
            EQ +   E+LDA P+ ++   A G+ +  NA +  +      +  +  +P+  F A + +
Sbjct: 469  EQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNE-VIDKEPQEIFPAEVAE 527

Query: 581  QHEAEFSIIIQAPKS-NCSIG-------EHYFHVTRRAISHPINQRKYYLTLFNDITELK 632
            +  A   ++ Q   S N  +        +    V   + S   ++    + +  D+TE K
Sbjct: 528  RFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERK 587

Query: 633  ETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSESQLLLTN 692
            E E  LR++ E A    +A+  FLA +SHE+RTP+ A+LG+  +  +    +  +  +T 
Sbjct: 588  EMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTR 647

Query: 693  AISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFDVI 752
               SA+ L   +NDILDFSK+EA +L ++   +NL D L  +       AQ K IEF + 
Sbjct: 648  INESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMD 707

Query: 753  WSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVA-----PEMLTIVVEDTG 807
              P+  L    D LR  Q++ NL  NA+KFT QG +V    V+        L   V+DTG
Sbjct: 708  IDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTG 767

Query: 808  CGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQ 867
             G+ Q +++ LF  F+QAD++ITR++GGTGLG+SI   L+ELM G+I V SE  +G+  +
Sbjct: 768  IGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFE 827

Query: 868  VNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYPDLLLNRL 927
             ++    Q                                                  ++
Sbjct: 828  FSVVCGLQDA------------------------------------------------KM 839

Query: 928  REVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKL 987
            R++S       +P H  L    VLV DD+   R ++   L+ +  +   VS+G +A  ++
Sbjct: 840  RDIS-------QPVHG-LADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891

Query: 988  SQHPEQYDLLITDCHMPHLDGFALTRKVKQEISL---FKGAVVGCTAEDSRLAAEQALQA 1044
             Q P  +D+L  D +MP ++G  L  +VK  + L    K  +V     +  L  E +   
Sbjct: 892  QQKP--FDMLFVDWNMPGMNGIELLTRVK-TLGLRGHMKSFLVTAYGREINLDGENSKL- 947

Query: 1045 GMDKVIYKPYTLANL 1059
             +D +I KP   +NL
Sbjct: 948  -VDALIVKPVNPSNL 961



 Score = 69.7 bits (169), Expect = 2e-15
 Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 39/262 (14%)

Query: 950  VLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGF 1009
            +L+ +D+ +N+ +    L + GL+  + + G +A E+L +H + +DL++ D  MP +DG 
Sbjct: 994  LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERL-EHAD-FDLVLMDMQMPVMDGI 1051

Query: 1010 ALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTT 1069
              T  ++         +V  TA    +  E+ LQAGM+  + KP  +    +VL  +L  
Sbjct: 1052 TATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQV 1111

Query: 1070 Q----------------------WVALPEQSWLDAYQ--------EEEREEMAMVVAESL 1099
                                    + LP+ + +D  Q        ++   E+     +S 
Sbjct: 1112 SDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQ 1171

Query: 1100 AQDI----ALLNQPD-CDVKALAHRIKGAAGSLQLQRLADLAKTVEKQNDPQQLVADK-- 1152
              ++     L+   D      +AH +KG+A +L L+ LA LA  +E+  + Q L + +  
Sbjct: 1172 VDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPSFELL 1231

Query: 1153 QQLINAMHEVVEQAQQWLHQYQ 1174
            QQ  + + +V ++   W HQ++
Sbjct: 1232 QQAQSLLTQVDDELSAWEHQHK 1253