Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1093 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  189 bits (479), Expect = 1e-51
 Identities = 180/594 (30%), Positives = 277/594 (46%), Gaps = 116/594 (19%)

Query: 620  YYLTLFNDITELKETEQA-----------LRQSNEQALQAVEARNHFLAVVSHELRTPIA 668
            Y   L N  TE +   QA           LRQ+ + A QA + ++ FLA +SHE+RTP+ 
Sbjct: 556  YLRKLINQRTEAQHALQAQLALSRGLLEQLRQAKDDAEQASQTKSTFLATMSHEIRTPMN 615

Query: 669  AMLGLMEILA--SRLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYN 726
            A++GL+E+    SR   S++Q L T   S+   L+L + DILD S+IE+  + L     N
Sbjct: 616  AVIGLLELALEDSRSGRSDAQTLQTAHDSAIGLLEL-IGDILDISRIESGHISLQPVPTN 674

Query: 727  LADELGPLLRGFEASAQLK------EIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAI 780
            L + +   LR FE +A+ K      E+  + +W     +LA  D LR  QI++NL+SNAI
Sbjct: 675  LVELVRATLRVFEGNARAKGLHLHGELPAEPVW-----VLA--DPLRLKQILSNLISNAI 727

Query: 781  KFTDQGRVVFKIDVAPEM-------LTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRF 833
            KFTD+G V   + + P++       + + V DTG G++      LF  F Q D    R+ 
Sbjct: 728  KFTDRGEVQACL-LLPKVAGHGILAIELNVRDTGIGISPADQARLFSAFVQVDGPRARQ- 785

Query: 834  GGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPY 893
             G GLG+ I   L ELM G + ++S   +G   +V + L    C+       A +   P 
Sbjct: 786  -GAGLGLVISRTLAELMGGALSLQSV--EGVGTRVQVSLRLPVCE-------APAQADP- 834

Query: 894  MLWAKALGMRVEENEEWVEQSGHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVA 953
                                                     Q  T  ++S  L  ++LV 
Sbjct: 835  -----------------------------------------QLTTHESNSGPL--NILVV 851

Query: 954  DDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTR 1013
            DD   N LL+++QL  LG   TL  +G  A  +  +   ++DL+ITDC MP +DG  LTR
Sbjct: 852  DDYPANLLLLERQLQTLGHHVTLAENGEIALARWQE--ARFDLVITDCSMPVMDGHELTR 909

Query: 1014 KVKQ---EISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTTQ 1070
            +++    E  L  G ++G TA        + L +GMD+ ++KP  L  L+  L +    Q
Sbjct: 910  RIRSLEGERGLPAGRILGVTANAQAEERTRCLASGMDECLFKPIGLRTLKTHLPQVRPQQ 969

Query: 1071 WVALPEQSWLD------AYQEEER------EEMAMVVAESLAQDIAL-LNQPDCDVKALA 1117
                P  S  D        Q++E+      E++++ V E LA   AL  + PD  V+ALA
Sbjct: 970  PSPEPFHSGFDLAELRHLTQDDEQLTRHLLEQLSISVGEDLAALRALSTDAPDETVRALA 1029

Query: 1118 HRIKGAAGSLQLQRLADLAKTVEKQN--------DPQQLVADKQQLINAMHEVV 1163
            HRIKG A  ++++ +    + +E  +           QL    Q L++ M E +
Sbjct: 1030 HRIKGGAKMIRVRTVVKDCEAIEHAHAKGLPTVEQRAQLQVSLQALLDEMREAL 1083



 Score = 61.6 bits (148), Expect = 3e-13
 Identities = 113/539 (20%), Positives = 220/539 (40%), Gaps = 38/539 (7%)

Query: 7   LDPNEQAYVEQKSTVTIAVLKEIWMPYWGGTGQEPI-GIEHDFASGIAKELGINIEYKGF 65
           L  +++ +++Q+  + +   +  + P+     Q    G+  D+A  I ++L I IE + F
Sbjct: 42  LSGDDRHWLKQRERLVMGSARPDYPPFEINVSQHDYEGLSADYAGIIGEQLDIPIEVRRF 101

Query: 66  DTIEALLNAVSTGKADMAIGFGQTLAREGKFLFSKPLYENVRVIWLRD-KAMEEKP-FAS 123
           D+    + A+  G+ D+        A + +   S P  +++ VI  R+ ++++  P  A 
Sbjct: 102 DSRHEAITALRDGRIDLLGSSNAFEAADAQLSLSTPYADDLPVIVTREGRSLKSTPELAG 161

Query: 124 LKWVCIQGTSYCEILKDRG-YP--NIIMARNYSSSVEMIRQGIADATVTNYVSLNHYLSQ 180
           L+   +    Y   +  R  YP   + + R+  + +  +  G ADA + + +S ++ + +
Sbjct: 162 LRLAMVD--HYLPAVSVRTLYPKAQLSLYRSTLAGLAAVALGEADAYLGDAISTDYMIGK 219

Query: 181 KRLALGKVIFDPDLGVQTNRILINNNEPLLLSAINKVIDADKQGLTENKLN--SADVYFL 238
                 K+     L  +     I ++ P L   ++K +    +    N L   S+    L
Sbjct: 220 SFQGTLKIDHFSQLAPEAFAFAIASDNPRLHRLVDKALSRISESERLNILRRWSSGNTSL 279

Query: 239 NDQANLNILRNE-----NVNPVVRYTIQDDLFPMSYWDEKEKKYKGYVHDLLERISTKSI 293
             Q +L  L  E       +P +   +   L P+++ D + +   G   DLL++IS ++ 
Sbjct: 280 LLQRHLTALSEEEESWITAHPTISVLVNTSLAPLTFNDAQHRP-SGITLDLLKQISLRTG 338

Query: 294 LKFEFV-PAYGRDVEDMLRHGKVDLIPSFNMTYVDDRYFIHTGRYTDIQFGYIETTRPYT 352
           L+F  V  A  + + D L  G+  +I +  + Y  DR  +   RYT     Y+ + R   
Sbjct: 339 LQFTPVESASSQAMIDRLVRGEAQMIGA--LGYGADR--LKQLRYTR---PYLVSPRVLV 391

Query: 353 TPITGILDRTGKF--NAYIAVQKNLSDVKVYRSMYDLEQALEKGD-------ITHGLLNK 403
           T   G      K      IA+ +      V +  Y   + +E  +       + +G+ + 
Sbjct: 392 TRNDGESPAQAKALDGKRIALVRGSPQQAVLQQRYPQAEIVEVDNPLGQMEAVANGVADA 451

Query: 404 VL---INQMLLDGHQDAFKLSPLTEGQDLRADMTMLVRKDARGLQNMLQKVLATFSQQEI 460
            L   IN      H    +L       D  A     V  D   LQ +L K L +   +E+
Sbjct: 452 ALSSHINAAYYISHVFKDRLRIANMLDDAPAIAAFAVAADQPQLQAILDKALLSIPPEEL 511

Query: 461 DEIKGAYDRVTVYFG--YDKQKVLIYALIILCALLSIGLILTLSLSRLRGKLRSSEQVA 517
           D++   +   T+     +   + L   +++L ALL  G++   S  R     R+  Q A
Sbjct: 512 DQLINRWRTSTLVSDSPWRDYRTLALQVLVLSALLLAGVVFWNSYLRKLINQRTEAQHA 570