Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1211 a.a., two-component sensor protein from Pseudomonas putida KT2440

 Score =  232 bits (591), Expect = 2e-64
 Identities = 275/1211 (22%), Positives = 514/1211 (42%), Gaps = 133/1211 (10%)

Query: 7    LDPNEQAYVEQKSTVTIAVLKEIWMPY-WGGTGQEPIGIEHDFASGIAKELGINIEYKGF 65
            L P ++ + E +  + +      + P+   G G +  G+  ++A+ I K L + +    F
Sbjct: 45   LTPEQRQWREGRQELVLGTSAPDYPPFDITGGGNDYQGLTAEYANLIGKALQLPVRVLRF 104

Query: 66   DTIEALLNAVSTGKADMAIGFGQTLAREGKFLFSKPLYENVRVIWLRD---KAMEEKPFA 122
             + +A + A+  G  D+        A       S+P   +  V+  R+   +A++     
Sbjct: 105  SSRQAAVEALRHGDIDLLGSANGYEAASDGLALSRPYAVDQPVLVTREDENRALDTDLAG 164

Query: 123  SLKWVCIQGTSYCEILKDRGYPNIIMARNYSSSVEMIRQGIADATVTNYVSLNHYLSQKR 182
                +        E+L       ++   + S ++  +  G AD  + + +S ++ L++  
Sbjct: 165  MRLGMLYHYLPRQEVLTAYPKAELLAFGSSSQALNAVAFGQADVFIGDTISTHYQLNRGH 224

Query: 183  LA-LGKVIFDPDLGVQTNRILINNNEPLLLSAINKVIDADKQGLTENKLN----SADVYF 237
            L  L    F     +      +   + +LL  +N ++D     +  +        +D+  
Sbjct: 225  LPRLRMANFGKHEAIGFG-FALRQQDTVLLDLVNTILDRQSPAIRSSIFKRWSAGSDLLL 283

Query: 238  LNDQANLNILRNE--NVNPVVRYTIQDDLFPMSYWDEKEKKYKGYVHDLLERISTKSILK 295
             + Q  L+    +    +PV+R    D   P+SY+D+    ++G   DLLE I  ++ L+
Sbjct: 284  SDRQLQLSAAEQQWLEKHPVMRVAADDAAAPLSYFDDSGH-FRGITADLLELIRLRTGLR 342

Query: 296  FEFVPAYG-RDVEDMLRHGKVDLIPSF------------NMTYVDDRYFIHTGRYTDIQF 342
            FE   A G  D+   L+ G+ D+I +             +  Y++  Y +   +  +   
Sbjct: 343  FEVQRASGIADMVARLKDGRADVIAALASAGKAGDDLQISRPYLESAYVLVNHKDNNA-L 401

Query: 343  GYIETTRPYTTPITGILDRTGKFNAYIAVQ-KNLSDVKVYRSMYDLEQALEKGDITHGLL 401
              +E  + +   IT    R    NA ++     +S V+   + Y +   L  G +   + 
Sbjct: 402  SSLEQLQGHRIAIT----RYSTMNAMLSRDYPKISWVETESAFYSMA-LLNSGAVDAVIT 456

Query: 402  NKVLINQMLLDGHQDAFKLSPLTEGQDLRADMTMLVRKDARGLQNMLQKVLATFSQQEID 461
              +  N  L    +   + S  +E     A+  M     +  L ++L K L + S +E+ 
Sbjct: 457  TLIDANHALASNPELVIRTSVGSEP----ANFAMATIAPSPALLSILDKALLSISPEELG 512

Query: 462  EIKGAYDRVTVYFGYDKQKVLIYALIILCALLSIGLILTLSL---SRLRGKLRSSEQVAK 518
             I    +R   +  ++      Y+ + L  +L+  ++L L+L   +RLR ++R  ++  +
Sbjct: 513  VIN---NRWRGFGRHEDDNSKGYSRLALQVVLATAVLLLLALLWNARLRLQIRQRQRAER 569

Query: 519  LSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQPECSFLAL 578
               +QL ++  LL+  P  +++ D +G +   N +Y +      ++   +   +  F   
Sbjct: 570  ALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGKKLKDSLFADS 629

Query: 579  PD--QHEAEFSIIIQAPKSNCSIGEHYFHVTRRAIS---------HPINQRKYYLTLFND 627
                Q +A++  ++ A   +  I +    +  R ++           + + +  +  + D
Sbjct: 630  EQARQIQADYQKVMAA--GSPLIKDRPLRIKGRDLTIYHWILPYRDSLGEVQGIIGGWID 687

Query: 628  ITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSE-S 686
            I+E ++    LRQ+ +QA  A  A++ FLA +SHE+RTP+ A++G++E+   R       
Sbjct: 688  ISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVD 747

Query: 687  QLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKE 746
            +  L  A  SA+ L   + DILD  +IE+  L L   + +LA  +  + R F+  A+ K 
Sbjct: 748  RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKG 807

Query: 747  IEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV------APEMLT 800
            +  +V  +P +      D LRF Q+++NL+SNAIKFT+ G+V   + +       P +L 
Sbjct: 808  LALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRISVRLLDDGTSTPAVLE 867

Query: 801  IVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEF 860
            + V D+G G+    ++ LF PF QA+        GTGLG++I  NL E+M G + +KS  
Sbjct: 868  LEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSMKSLE 927

Query: 861  EQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYP 920
            + GTQ+++ +PL                              RV+  E+          P
Sbjct: 928  DVGTQVRLKMPL-----------------------------QRVDGAEQPKPLPEQLDVP 958

Query: 921  DLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDG 980
            D  LN                        VLV DD   N  L+ +QL  LGL      DG
Sbjct: 959  DPRLN------------------------VLVIDDHPANLQLMAQQLGYLGLEHASARDG 994

Query: 981  LQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKG---AVVGCTAEDSRLA 1037
             +     +     +D+L+ DC+MPH++G+ L   V+ E    K     ++G TA      
Sbjct: 995  QEGL--ATWREGDFDVLVLDCNMPHMNGYQLATAVRAEERHGKRPPCTILGYTANAQPEV 1052

Query: 1038 AEQALQAGMDKVIYKPYTLANLRKVLS----RYLTTQWVALPEQSWLDAY---QEEEREE 1090
              + L AGMD  + KP +L+ L + L+    R        L +   L A       +R+ 
Sbjct: 1053 RRKCLTAGMDDCLLKPISLSTLSQRLAGIRPRRQQRPRRKLYQLDGLAAVVGPDPVDRQR 1112

Query: 1091 MAMVVAESLAQDIALLN--QPDCDVKAL---AHRIKGAAGSLQLQRLADLAKTVEKQNDP 1145
                + +SL  D+A L    P  D  A+   AH++  AA  L+   L    + +E  + P
Sbjct: 1113 FLETLHQSLQADLASLMALHPQHDSGAIAEQAHKVLSAARMLEAPDLMAACEALEASDLP 1172

Query: 1146 QQLVADKQQLI 1156
               V  ++Q +
Sbjct: 1173 TAQVRLRRQAL 1183