Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  187 bits (475), Expect = 4e-51
 Identities = 130/449 (28%), Positives = 215/449 (47%), Gaps = 50/449 (11%)

Query: 626  NDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSE 685
            +D+T +KE E  LR+S   A  A +A++ FLA +SHE+RTP+  ++G+  +       ++
Sbjct: 440  SDVTAIKEIEAQLRESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGELPAK 499

Query: 686  SQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLK 745
             +  + +   SA+RL   +NDILD SK EA ++ +D   ++LA+ +   +    A A  K
Sbjct: 500  QRHHIQSIKQSAQRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEK 559

Query: 746  EIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV------APEML 799
             +  +V  +         D LR  QI+ N LSNA+KFT  G +   + +       P  L
Sbjct: 560  RLPINVRIASEVPRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQIEGGKTAPPTKL 619

Query: 800  TIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSE 859
               V DTGCG+T  Q  +LF  F QA+++ + +FGGTGLG++I   L ELM G+  V+S+
Sbjct: 620  RFAVSDTGCGLTPEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLAELMGGQAGVESQ 679

Query: 860  FEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIY 919
            +  G+     +        +F+G V  +   S ++   K                 HN +
Sbjct: 680  YGSGSTFWFTV--------QFQGAVDGVDCPSKFLSPIKI----------------HNNF 715

Query: 920  PDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSD 979
                                  HS L    VL+A+DD  N+++    L   G+   +V +
Sbjct: 716  ------------------AHQDHSILQGAQVLLAEDDLTNQMVAVGLLEAAGMLVDVVGN 757

Query: 980  GLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAE 1039
            G  A EK +    +Y++++ D  MP +DG   TR +++ + L    +V  TA       +
Sbjct: 758  GAAAVEKAAS--GKYEIVLMDVRMPGMDGITATRLIRENVELLDLPIVAMTANAMNEHKD 815

Query: 1040 QALQAGMDKVIYKPYTLANLRKVLSRYLT 1068
            + L AGM   + KP+    L  V+  ++T
Sbjct: 816  ECLAAGMSDFVSKPFQPEQLYGVIQNWVT 844