Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  162 bits (411), Expect = 1e-43
 Identities = 131/493 (26%), Positives = 216/493 (43%), Gaps = 73/493 (14%)

Query: 625  FNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSS 684
            F DIT+ +  E+ LR++ E A      ++ FLA +SHE+RTP+  ++G+  +L     S 
Sbjct: 453  FRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSE 512

Query: 685  ESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQL 744
            E +        S E L   +NDILDFSK+EA +L LD   + L   +  ++      A  
Sbjct: 513  EQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHA 572

Query: 745  KEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDV-----APEML 799
            K IE   +  P   +L   D  R  Q++ NL  NA+KFT++G V  ++ +     AP M 
Sbjct: 573  KGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMA 632

Query: 800  TIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSE 859
               V DTG G+       LF  F+Q D++  RR+GGTGLG++I   L ELM G++ V+S 
Sbjct: 633  RFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESA 692

Query: 860  FEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIY 919
              +G++  + LPL          +++A    +P                   + SGH + 
Sbjct: 693  VGRGSRFWITLPL----------ELLAPQSAAP------------------PDLSGHRV- 723

Query: 920  PDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSD 979
                                           LV DD+ +N  +I++QL   G+      D
Sbjct: 724  -------------------------------LVVDDNPVNCDVIERQLRAFGVEVHACLD 752

Query: 980  ---GLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRL 1036
               G+    + +     +++ + D  MP + G  + R +   I +  G  +  T+     
Sbjct: 753  AGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGSEMVRMI-HAIPMLAGTRIVVTSSQGMP 811

Query: 1037 AAEQALQAGMDKVIYKPYTLANLRKVLSRYLTTQWVALPEQSWLDAYQEEE--REEMAMV 1094
            A +   Q  +D  ++KP   + L   + R L     A       + Y+  E   + + ++
Sbjct: 812  ADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAEEYKASEPAAKRLRIL 871

Query: 1095 VAES--LAQDIAL 1105
            VAE   + Q +AL
Sbjct: 872  VAEDNPVNQQVAL 884



 Score = 73.2 bits (178), Expect = 1e-16
 Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 30/249 (12%)

Query: 938  TEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLL 997
            +EPA  RL    +LVA+D+ +N+ +    L +LG +  +V DG +A E +   P  YD++
Sbjct: 861  SEPAAKRL---RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP--YDVV 915

Query: 998  ITDCHMPHLDGFALTRKVKQ-EISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTL 1056
            + D  MP +DG   TR ++   ++  +  +V  TA   R   +    AGMD  I KP   
Sbjct: 916  LMDVQMPEMDGLEATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDR 975

Query: 1057 ANLRKVLSRY------LTTQWVALPEQS------WLDAYQEEEREEMAMVVAESLAQD-- 1102
              L + L++Y         +  A P+ S       LDA   +   +  + +     +D  
Sbjct: 976  HKLAEALAKYSGAPETKPAEPPAAPQNSKAVDRDVLDALAADIEADTVVEILVKFMEDAR 1035

Query: 1103 ------IALLNQPDCD-VKALAHRIKGAAGSLQLQRLADLAKTVEKQNDPQQLVADKQQL 1155
                   AL    D + V+  AH IKGAA SL L  + D    +E+       VA +   
Sbjct: 1036 TRQNNAAALAPTGDLEKVRREAHTIKGAAASLGLLAVRDACLALEQAARAGGEVAPQ--- 1092

Query: 1156 INAMHEVVE 1164
            I+ +H+ +E
Sbjct: 1093 IDRLHQDIE 1101