Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., two-component system sensor histidine kinase RcsC from Serratia liquefaciens MT49

 Score =  202 bits (515), Expect = 8e-56
 Identities = 144/500 (28%), Positives = 245/500 (49%), Gaps = 64/500 (12%)

Query: 627  DITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSES 686
            D++   + E++L++    A QA ++++ FLA VSHELRTP+  ++G +++L ++      
Sbjct: 447  DVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPQGV 506

Query: 687  QLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKE 746
              L+    +S+  L   ++DILDFSKIE++QL+++   ++  + +  +   +      K 
Sbjct: 507  DRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKR 566

Query: 747  IEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLTIVVEDT 806
            +        N     + D +R  Q+++NLL+NAIKFTD G ++ ++      L   V DT
Sbjct: 567  LGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVCTRGNYLEFSVRDT 626

Query: 807  GCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQI 866
            G G+ + +I  LF PF Q  S + R F GTGLG++I   LI +M+G I V+SE   G+  
Sbjct: 627  GVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSLF 686

Query: 867  QVNLPL------VTQTCDEFRGQVVAMSYRS----------------------------- 891
             + +PL      + Q  D ++G+ + +  R+                             
Sbjct: 687  TIRIPLFSAQFPIPQPSDTWQGKTLWLDIRNQRLESYLMEILGGYGATVLRHQGQDTAEG 746

Query: 892  -------PYMLWAKALGM------RVEENEE-----WVEQSGHNIYPDLLLNRL----RE 929
                   P M+    L         +  ++E     W+  +       +LLNRL     E
Sbjct: 747  EVMLSDHPLMISTPLLAQIQFSIEHIGPSQETRPGYWMHSTSTPRETLVLLNRLFGTQAE 806

Query: 930  VSNLTQAQTEPAHSRLLQG---HVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEK 986
              N       PA + L+     H+LV DD  INR L+  QLS LG      +DG+ A + 
Sbjct: 807  SGNTLAQLPVPAKASLIDNGDIHLLVVDDHPINRRLLSDQLSSLGYQVVTANDGVDALDV 866

Query: 987  LSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGM 1046
            LS++    D+++TD +MP++DG+ LT+++++    F   V+G TA       ++ ++AGM
Sbjct: 867  LSRN--TVDIVLTDVNMPNMDGYHLTQRLRE--MQFASPVIGVTANALAEEKQRCIEAGM 922

Query: 1047 DKVIYKPYTLANLRKVLSRY 1066
            D  + KP TL  L + L+ Y
Sbjct: 923  DNCLSKPVTLETLEQTLAFY 942