Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1050 a.a., transporter substrate-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  166 bits (421), Expect = 7e-45
 Identities = 160/555 (28%), Positives = 249/555 (44%), Gaps = 86/555 (15%)

Query: 637  ALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRL-KSSESQLLLTNAIS 695
            A RQS   A +A  A++ FL  +SHE+RTPI A++G++E++  R   + +++  +  A  
Sbjct: 558  AQRQSRNLAHRASRAKSVFLTTMSHEIRTPIGAIMGMLELVMKRPGDTQQNRQSVQVAWD 617

Query: 696  SAERLKLHVNDILDFSKIEAQQLQL---DIGLYNLADELGPLLRGFEASAQLK-EIEFDV 751
            +A+ L L + +ILD S+IE+ +L L      L  L +E   L  G  A   L   +E D 
Sbjct: 618  AAQALLLLIGNILDVSRIESGRLVLRPERASLRKLIEEPAMLFEGMAAQKGLAFVLERDA 677

Query: 752  IWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKI-----DVAPEMLTIVVEDT 806
                + L+    D  RF QI+ N++ NAIKFT++G++   +     D    +L I V DT
Sbjct: 678  ELQEDVLV----DRSRFRQILVNIVGNAIKFTERGQITLSVQLDGRDEGYLLLRITVVDT 733

Query: 807  GCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQI 866
            G G+ +   + LF PFAQ ++    +  G+GLG+ I   L  +M G + + SE   GT +
Sbjct: 734  GEGIDEATRQRLFQPFAQGNTPNVVQ--GSGLGLYICRTLTMMMGGSLAIHSEPGHGTTV 791

Query: 867  QVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYPDLLLNR 926
             V+L L                   P M                  Q   +I P   L+R
Sbjct: 792  TVSLKL-------------------PVMA---------------ERQDVPDIQPASPLSR 817

Query: 927  LREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEK 986
                               L   VL+ DD+ + R+++ +QLS LG  A        A E 
Sbjct: 818  -------------------LSLRVLIVDDNPVGRMVLSQQLSWLGHRAIGADSSASALEA 858

Query: 987  LSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGM 1046
            L     Q D +ITDC+MP + GF LT+ ++        AV G TA+   +  E+A +AGM
Sbjct: 859  LKH--AQPDAVITDCNMPGMSGFELTQLIRAHYPDI--AVFGATADAREIVRERAREAGM 914

Query: 1047 DKVIYKPYTLANLRKVLSRYLTTQWVALPEQSWLDAYQEEEREE----------MAMVVA 1096
               ++KP TL  L ++L+    +  VA   Q  L      E  E             V+ 
Sbjct: 915  RDCLFKPVTLTMLAELLAPLKGSVPVAEEPQDSLACNLPPELLEGDNLPLFLSLQISVID 974

Query: 1097 ESLAQDIALLNQPDCDVKALAHRIKGAAGSLQLQRLADLAKTVEKQNDP---QQLVADKQ 1153
            ESLA   A L  P+  ++   H+++     L +  L    +  E   D     QL+A+ +
Sbjct: 975  ESLAHLRAWLVAPETSLRETLHKLRSGLALLGVPALIARCEAQEATPDRGGIHQLLAELE 1034

Query: 1154 QLINAMHEVVEQAQQ 1168
            QL  A+    +  +Q
Sbjct: 1035 QLRAALQRWHDSGRQ 1049



 Score = 35.0 bits (79), Expect = 3e-05
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 7   LDPNEQAYVEQKSTVTIAVLKEIWMPYWGGTGQEPIG-IEHDFASGIAKELGINIEYKGF 65
           L  +E  ++ +   + +AV   +  PY   TG    G I  DF    A  LG+ IE   +
Sbjct: 40  LSASEWRWLREHRKIRLAVWLPMSPPYDITTGLNDYGGINADFIGLAADNLGVEIEVIRY 99

Query: 66  DTIEALLNAVSTGKADMAIGFGQTLAREGKFLFSKPLYENVRVIWLRDKAMEE 118
               A L A+  G+AD           +G  + S P   N  V  + ++A ++
Sbjct: 100 PNYHAALEALRAGEADFIAQASDNQHNQG-LILSHPYSPNAAVEVVNNEATQD 151