Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 949 a.a., two-component system sensor histidine kinase RcsC from Escherichia coli ECRC62

 Score =  169 bits (428), Expect = 1e-45
 Identities = 133/500 (26%), Positives = 247/500 (49%), Gaps = 65/500 (13%)

Query: 627  DITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSES 686
            D++   + E++L++  + A QA ++++ FLA VSHELRTP+  ++G +++L ++      
Sbjct: 445  DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGV 504

Query: 687  QLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKE 746
              L+T   +S+  L   ++DILDFSKIE++QL+++   ++  + +  +   +      K+
Sbjct: 505  DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 747  IEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLTIVVEDT 806
            +       P+  +  N D +R  Q+++NLLSNAIKFTD G +V  +    + L+I V DT
Sbjct: 565  LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT 624

Query: 807  GCGMTQTQIESLFVPFAQADSTITRRFGGT------------------------GLGMSI 842
            G G+   ++  LF PF Q  + + R F GT                        G+G   
Sbjct: 625  GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQF 684

Query: 843  VANL------------IELMNGK---IEVKS----EFEQGTQIQVNLPLVTQTCDE---- 879
               +            +E ++GK   + V++    +F + +  +  + + T    E    
Sbjct: 685  TVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPE 744

Query: 880  ---FRGQVVAMSY--RSPYMLWAKALGMRVEENE-EWVEQ--SGHNIYPDLLLNRLREVS 931
                  +VV+  +  R+      + +G+ +E+   EWV    + H +   L    L E+ 
Sbjct: 745  DVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARIYLIEME 804

Query: 932  NLTQAQTEPAHSRLLQGH----VLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKL 987
            +   A   P+  + +  +    +LV DD  INR L+  QL  LG      +DG+ A   L
Sbjct: 805  SDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL 864

Query: 988  SQHPEQYDLLITDCHMPHLDGFALTRKVKQ-EISLFKGAVVGCTAEDSRLAAEQALQAGM 1046
            S++    D++++D +MP++DG+ LT++++Q  ++L    V+G TA       ++ L++GM
Sbjct: 865  SKN--HIDIVLSDVNMPNMDGYRLTQRIRQLGLTL---PVIGVTANALAEEKQRCLESGM 919

Query: 1047 DKVIYKPYTLANLRKVLSRY 1066
            D  + KP TL  +++ L+ Y
Sbjct: 920  DSCLSKPVTLDVIKQTLTVY 939