Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1197 a.a., acid-sensing system histidine kinase EvgS from Escherichia coli ECRC62

 Score =  219 bits (557), Expect = 1e-60
 Identities = 286/1252 (22%), Positives = 516/1252 (41%), Gaps = 198/1252 (15%)

Query: 7    LDPNEQAYVEQKSTVTIAVLKEIWMPYWGGTGQEPI-GIEHDFASGIAKELGINIEYKGF 65
            L   E  ++  K  + IAV K           Q+ + GI  D+ + + + L I +  + +
Sbjct: 44   LSNKELRWLASKKNLVIAVHKSQTATLLHTDSQQQVRGINADYLNLLKRALNIKLTLREY 103

Query: 66   DTIEALLNAVSTGKADMAIGFGQTLAREGKFLFSKPLYENVRVIWLRDKAMEEKPFASLK 125
               +  ++A+  G+ D+ +    T         S PL  ++               A+ K
Sbjct: 104  ADHQKAMDALEEGEVDIVLSHLVT---------SPPLNNDI---------------AATK 139

Query: 126  WVCIQGTSYCEILKDRGYP-------NIIMARNYSSSVEMIRQGIADATVTNYVSL---- 174
             + I   +    L D   P       NI    NY    E+I Q    AT+ ++ +L    
Sbjct: 140  PLIITFPALVTTLHDSMRPLTSPKPVNIARVANYPPD-EVIHQSFPKATIISFTNLYQAL 198

Query: 175  -------NHYLSQKRLALGKVI---FDPDLGV--------QTNRILINNNEPLLLSAINK 216
                   N Y     +    +I   F   L V        Q N  L      +L   +N+
Sbjct: 199  ASVSAGHNDYFIGSNIITSSMISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNR 258

Query: 217  VIDA----DKQGLTENKLNSADVYFLNDQANLNILRNENVNPVVRYTIQDDLF--PMSYW 270
             +DA     +  +++N L++ ++ FLN    L     + +       + ++ +  P S  
Sbjct: 259  FVDALTNEVRYEVSQNWLDTGNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMT 318

Query: 271  DEKEKKYKGYVHDLLERISTKSILKFEFVP-AYGRDVEDMLRHGKVDLIPSFNMTYVDDR 329
            DE     +G + D+L  I+ ++ L F  +  ++       L  G  D+IP     Y +DR
Sbjct: 319  DENGS-VRGVMGDILNIITLQTGLNFSPITVSHNIHAGTQLSPGGWDIIPG--AIYSEDR 375

Query: 330  YFIHTGRYTDIQFGYIETTRPYTTPITGILD--RTGKFNAYIAVQKNLSDVKVYRSMYDL 387
                     ++ F     T PY   +    D  +T K    +A+          + MY  
Sbjct: 376  E-------NNVLFAEAFITTPYVFVMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPE 428

Query: 388  EQALEKGD-------ITHGLLNKVLINQM----LLDGHQDAFKLSPLTEGQDLRADMTML 436
             + ++  +       +  G L+ ++  Q+    ++D +        L  G    A ++  
Sbjct: 429  VEWIQVDNASAAFHKVKEGELDALVATQLNSRYMIDHYYPNELYHFLIPGVP-NASLSFA 487

Query: 437  VRKDARGLQNMLQKVLATFSQQEIDEIKGAYDR-----VTVYFGYDKQKVLIYALIILCA 491
              +    L++++ K L      E+  +   + +     +  +  Y +Q  ++  L +L  
Sbjct: 488  FPRGEPELKDIINKALNAIPPSEVLRLTEKWIKMPNVTIDTWNLYSEQFYIVTTLSVLLV 547

Query: 492  LLSI--GLILTLSLSR---LRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGE 546
              S+  G  L  S+ R   ++G L +          Q+ +   L D++P+  ++ + +G 
Sbjct: 548  GSSLLWGFYLLRSVRRRKVIQGDLEN----------QISFRKALSDSLPNPTYVVNWQGN 597

Query: 547  VVLTNAAYRKIYHTCCEKGCVQPQPECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHV 606
            V+  N+A+   +     K  + P  E S     D       +  +  K N +I    F +
Sbjct: 598  VISHNSAFEHYFTADYYKNAMLPL-ENSDSPFKDVFSNAHEVTAET-KENRTIYTQVFEI 655

Query: 607  T----RRAISH-------PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHF 655
                 +R I+H       P +    Y+  + DITE ++   AL     +A++A  A++ F
Sbjct: 656  DNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIKATVAKSQF 715

Query: 656  LAVVSHELRTPIAAMLGLMEILASRLKSSESQL-LLTNAISSAERLKLHVNDILDFSKIE 714
            LA +SHE+RTPI++++G +E+L+    S E ++  ++ A ++ + L   + +ILD  KIE
Sbjct: 716  LATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIE 775

Query: 715  AQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTN 774
            +   QL     ++   +      F A A  K I      +     L   D   F Q+++N
Sbjct: 776  SGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSN 835

Query: 775  LLSNAIKFTDQGRV-----VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTI 829
            LLSNA+KFT +G V     +  ID    ++ + + D+G G++Q + + LF  ++Q  ++ 
Sbjct: 836  LLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQ--TSA 893

Query: 830  TRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSY 889
             R+  G+GLG+ I   LI+ M G + ++S    GT   + +P+      E   QV  +  
Sbjct: 894  GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPV------EISQQVATVEA 947

Query: 890  RSPYMLWAKALGMRVEENEEWVEQSGHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGH 949
            ++                           +P  L  +L                      
Sbjct: 948  KAE--------------------------HPITLPEKL---------------------S 960

Query: 950  VLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGF 1009
            +L+ADD   NRLL+K+QL+ LG      +DG+QA  K+S   + YDLLITD +MP++DGF
Sbjct: 961  ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGF 1018

Query: 1010 ALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTT 1069
             LTRK++++ S     + G TA       E+ L  GM+  ++KP TL  L+  LS+    
Sbjct: 1019 ELTRKLREQNSSL--PIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076

Query: 1070 QWVALPEQSWLD--------AYQEEEREEMAMVVAESLAQDI-----ALLNQPDCDVKAL 1116
              +A P+   LD        A   +  +E+ M       +D+     AL    +      
Sbjct: 1077 AHIA-PQYRHLDIEALKNNTANDLQLMQEILMTFQHETHKDLPAAFQALEAGDNRTFHQC 1135

Query: 1117 AHRIKGAAGSLQLQRLADLAKTVEKQNDPQQLVADKQQLINAMHEVVEQAQQ 1168
             HRI GAA  L LQ+L +++  +E          +  QL+N++ E + +  Q
Sbjct: 1136 IHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQ 1187