Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  160 bits (406), Expect = 4e-43
 Identities = 115/402 (28%), Positives = 192/402 (47%), Gaps = 67/402 (16%)

Query: 622  LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRL 681
            L L  DITE    +  L+QS   A QA  A++ FLA +SHE+RTP+  ++G  +++    
Sbjct: 507  LMLTEDITEAYFQKNDLQQSMRHAEQANRAKSEFLANMSHEIRTPLNGIIGFSDLVLKTE 566

Query: 682  KSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEAS 741
             +   +  L+    SA  L   +NDILDFSKIEA +L LDI  Y+L + +          
Sbjct: 567  LNDRQEQYLSIVNQSANSLLNIINDILDFSKIEAGKLDLDIERYDLYELVEQASDIITYV 626

Query: 742  AQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEM--- 798
               K +E  +  SPN    A  D++R  Q++ NLL NA KFTD+G +  K+         
Sbjct: 627  IHQKGLEMLLNISPNIPRFAWIDSVRLKQVLVNLLGNASKFTDKGEIELKLTPLSNSNKN 686

Query: 799  ----LTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854
                +   V DTG G+   + + +F  F+Q D + T+++GGTGLG++I   L++LM  K+
Sbjct: 687  GEMDIRFSVRDTGIGIKSEKQDKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMGSKL 746

Query: 855  EVKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQS 914
            ++ S   +G+    +L +    C++  GQ + +                           
Sbjct: 747  QLTSTPNRGSTFYFDLRI---KCED--GQAIPL--------------------------- 774

Query: 915  GHNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSA 974
                                  + EP   ++L     + DD+A NR++I++ L+  G+  
Sbjct: 775  ----------------------EGEPNLHKIL-----IVDDNANNRMIIERMLALKGIQT 807

Query: 975  TLVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVK 1016
                +G +A ++L    E+YD+++ D  MP+L+G    RK++
Sbjct: 808  VQAKNGYEAIQRLVD-GEEYDVILMDFQMPYLNGIDTARKIR 848



 Score = 60.5 bits (145), Expect = 8e-13
 Identities = 61/272 (22%), Positives = 128/272 (47%), Gaps = 37/272 (13%)

Query: 923  LLNRLREVSNLTQAQTEPAHSRLL-------QGHVLVADDDAINRLLIKKQLSELGLSAT 975
            + + L ++ +  +   EP   RL        +  +L  +D+AIN LL K  +  +    T
Sbjct: 890  MYDALLKIKHNNRKGKEPKEKRLYAPPLLTEKSSILFVEDNAINMLLGKTVIHNISPKTT 949

Query: 976  LV--SDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAED 1033
            ++  S+G QA E L  +    D++  D  MP ++G+  T+ +++E       +   TA +
Sbjct: 950  VLEASNGKQALELLKVNLP--DMIFMDVQMPEMNGYEATKIIRKEYKNKNLLIFALTAGN 1007

Query: 1034 SRLAAEQALQAGMDKVIYKPYTLANLRKVLSRYLTT-----QWVALPEQSW--------- 1079
             +   E+ ++AGMD  I KP+   +L ++L ++  +        ++P ++          
Sbjct: 1008 LKGEKEKCMEAGMDDFIAKPFVEEDLIRLLEKWSKSIDKHKNAPSIPSENLNPFNIRKLQ 1067

Query: 1080 --LDAYQEEER--EEMAMVVAESLAQ---DIALLNQPD-CDVKALAHRIKGAAGSLQLQR 1131
              +D    E+   +++  +  + L +    + LL   D  D+  +AH++  +A SL +++
Sbjct: 1068 LVMDFKDLEDPIFKQLINISKKELTKTKDSLELLPAIDNPDLSKIAHKLYSSATSLCMEK 1127

Query: 1132 LADLAKTVEKQNDPQQLVADKQQLINAMHEVV 1163
            LA LA  +E  +    L  +K  LI+++ + +
Sbjct: 1128 LASLASKLENAS----LSMEKHSLISSLTDEI 1155