Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  171 bits (434), Expect = 2e-46
 Identities = 126/444 (28%), Positives = 219/444 (49%), Gaps = 51/444 (11%)

Query: 622  LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRL 681
            +++  D+TE K  E+ L+++ E A  A  A++ FLA +SHE+RTP+  +LG++ +L    
Sbjct: 546  ISVGRDVTEQKLWEKGLKEAKEVAEGANRAKSEFLASMSHEIRTPMNGLLGMIGLLEHTK 605

Query: 682  KSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEAS 741
               E Q ++     S E L + + DILD+SKIE  +L+L++      +EL  ++  F   
Sbjct: 606  MDDEQQSIVKVIKDSGESLLVIIKDILDYSKIEEGKLELELSSSKFREELNKVINIFSGM 665

Query: 742  AQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQ-GRVVFKIDVAP---- 796
               KE+  ++  +P        D  + +QI+ N++ NA+KFT + G V  K+   P    
Sbjct: 666  VVGKELSLNLDIAPTIPQWLILDNEKLSQILFNIIGNAVKFTPKGGDVSIKVSGEPILDK 725

Query: 797  -EMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIE 855
              ML   V+DTG G+ +++I+ L  PF Q          G+GLG++I   LIELM G ++
Sbjct: 726  NFMLYFNVKDTGVGIPKSKIDQLINPFTQTGRGTAEEKSGSGLGLAIANKLIELMGGSLQ 785

Query: 856  VKSEFEQGTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSG 915
            ++SE  +G+              EF   V A                R+ ++EE V +  
Sbjct: 786  IESEVGKGS--------------EFSFTVFA----------------RISDSEEKVGKDD 815

Query: 916  HNIYPDLLLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSAT 975
            +  Y        +E   L+        S      +L+A+D+ IN   +K  + +LG S  
Sbjct: 816  YEKY-------AKEEYKLSHI------SDKFPKEILLAEDNDINLKFMKLLMKQLGYSVD 862

Query: 976  LVSDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSR 1035
             VS G +A + + +  ++YD++  D  MP +DG   +R++K+        ++G +A   +
Sbjct: 863  TVSTGEEAVKAVQK--KRYDMIFMDYQMPVMDGLEASREIKKMKEGKYIRIIGLSANVFK 920

Query: 1036 LAAEQALQAGMDKVIYKPYTLANL 1059
               E+A +AGMD  + KP  + ++
Sbjct: 921  EDIERAYEAGMDDYLTKPIKIQDV 944