Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1111 a.a., Sensory/regulatory protein RpfC from Alteromonas macleodii MIT1002

 Score =  181 bits (459), Expect = 3e-49
 Identities = 153/572 (26%), Positives = 259/572 (45%), Gaps = 91/572 (15%)

Query: 626  NDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSE 685
            +DIT  K  E  L+ + E A QA  AR  FLA +SHE+RTP+ A++G  +++       E
Sbjct: 509  SDITHRKVMENELKAAKENAEQAAAARTAFLANMSHEIRTPMNAIIGFSDLMLGEALREE 568

Query: 686  SQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLK 745
             +  LT    SA  L   +NDILD +K++  +L LD   + + +EL  ++  F   A+ K
Sbjct: 569  QKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLDYRDFLIREELDLVISTFWLEAKRK 628

Query: 746  EIEFDVIWSPNSLLLANFDAL--RFNQIVTNLLSNAIKFTDQGRVVFKIDVAPEMLTIVV 803
            ++   ++ + +  +   +  +  R  Q++ NL+ NA+KFT +G V   +    + +   V
Sbjct: 629  KV--GLVLNVDDSVANGYRGVPERMRQVLNNLIGNAVKFTHEGEVTINVKSDEKYVYFDV 686

Query: 804  EDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQG 863
             DTG GMTQ Q+E +F PF+QAD++++R++GGTGLG +I   L+ELM G I   SE  +G
Sbjct: 687  TDTGIGMTQEQVERVFDPFSQADASMSRKYGGTGLGTTISKQLVELMGGNICATSEKGKG 746

Query: 864  TQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYPDLL 923
            T     LPL     D++                                     +  +L 
Sbjct: 747  TTFTFRLPLEVVEIDDY-------------------------------------VSSELS 769

Query: 924  LNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQA 983
               +R  ++LT               VL+ DD   N  L+   L   G S    +DG  A
Sbjct: 770  SKAVRIETSLT---------------VLIVDDVQQNLELLSLLLKRAGHSVETATDGQIA 814

Query: 984  FEKLSQHPEQYDLLITDCHMPHLDGFALTRK---VKQEISLFKGAVVGCTAEDSRLAAEQ 1040
             +K+    + +D+++ D  MP LDG    +K    ++E SL    ++  TA         
Sbjct: 815  LDKM--RAKSFDVVLMDLQMPKLDGLEAAKKRREFEKENSLPPTPIIALTASVLVQDKHA 872

Query: 1041 ALQAGMDKVIYKPYTLANLRKVLSRYL---TTQWVALPEQSWLDAYQEEEREEMAMV--- 1094
            A QAGM+    KP     L   ++R L   T Q  ++P+   ++A     + +  ++   
Sbjct: 873  AQQAGMEGFANKPVDFPQLMDEIARVLNIDTLQVDSVPDTLEVNAPASALKVDKNVLDLK 932

Query: 1095 -------VAESLAQDI----------------ALLNQPDCDVKALAHRIKGAAGSLQLQR 1131
                     E++ Q++                A + +    V AL+H +KG +G+L L  
Sbjct: 933  KAVDLWGSEEAVLQEVDKFSTTCRDKVDDLMGAAIREDYKAVAALSHGLKGTSGNLCLTT 992

Query: 1132 LADLAKTVEKQNDPQQL-VADKQQLINAMHEV 1162
                 + +E Q    ++ + D  +L +A+ ++
Sbjct: 993  FYHTTREIEAQALKSEVNIEDVNRLRDALDKI 1024