Pairwise Alignments

Query, 1176 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Signal transduction histidine-protein kinase BarA from Alteromonas macleodii MIT1002

 Score =  164 bits (416), Expect = 1e-44
 Identities = 133/447 (29%), Positives = 205/447 (45%), Gaps = 68/447 (15%)

Query: 628  ITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSESQ 687
            + E K     L ++     QA  A++ FLA +SHE+RTP+  +LGL +++ S   S  ++
Sbjct: 167  LVESKNKTLELNRALASEKQASAAQSRFLATMSHEIRTPLNGILGLTDVVLSHDISESAR 226

Query: 688  LLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEI 747
              L     S   L   +NDILD SK+ A +L L+I  ++L       +  +   AQ K I
Sbjct: 227  PNLEKIQRSGLSLNRILNDILDLSKLNAGKLALEIIPFDLKSTAKNCVAFYAQLAQNKGI 286

Query: 748  EFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAP-----EMLTIV 802
               +            DA R +Q++ NL+SNAIKFT QG V   +         + +   
Sbjct: 287  SLRIEVDKTLNTCVVGDATRLSQVLNNLVSNAIKFTHQGSVTLGLSKGEASKTHQFVRFS 346

Query: 803  VEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQ 862
            V+DTG G+  ++ E +F  F QA+S+I R  GGTGLG+ IV +L+E M G + +KS   Q
Sbjct: 347  VKDTGDGIDASEQERVFDAFTQANSSINRMHGGTGLGLQIVKSLVEAMGGTVYLKSAVGQ 406

Query: 863  GTQIQVNLPLVTQTCDEFRGQVVAMSYRSPYMLWAKALGMRVEENEEWVEQSGHNIYPDL 922
            G++    LP       E    V+                          EQ     +P+L
Sbjct: 407  GSEFYFELPF------EIADSVIGAK-----------------------EQESTPSFPNL 437

Query: 923  LLNRLREVSNLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLVSDGLQ 982
                                       VLVA+D+ IN+++ K  L + GL   L ++G +
Sbjct: 438  T--------------------------VLVAEDNDINQVVAKSLLEDTGLRVALANNGNE 471

Query: 983  AFE-KLSQHPEQYDLLITDCHMPHLDGF-ALTRKVKQEISLFKGAVVGCTAEDSRLAAEQ 1040
            A E  L QH   +DL++ D HMP ++G  A     K  I++    ++  TA       ++
Sbjct: 472  AVEIALKQH---FDLILMDLHMPEMNGSEAALALRKANITI---PIIAFTAAVVAEEIDK 525

Query: 1041 ALQAGMDKVIYKPYTLANLRKVLSRYL 1067
            AL +GM+  + KP     L  VL++YL
Sbjct: 526  ALASGMNGYLTKPVNKTELHAVLTKYL 552