Pairwise Alignments

Query, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  152 bits (385), Expect = 3e-41
 Identities = 137/586 (23%), Positives = 242/586 (41%), Gaps = 34/586 (5%)

Query: 4   LNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAGRHH 63
           LN L  Y RL     G     T+ ELAER F S RH R LL +  Q GWL W  ++GR  
Sbjct: 4   LNRLNQYQRLWQPSAGETQHVTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGK 63

Query: 64  RSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGRLHI 123
           R  L      E L+  +  + ++ G+    L +          +L+   G   Q     +
Sbjct: 64  RGRLQFLVTPESLRTAMMEQALEKGQQLNVLELAQLAPGELRAMLQPFMGGQWQNDTPTL 123

Query: 124 QLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVSSDANGHVHP--ELAHHWHYDPHTWQW 181
           ++ Y RP +PL P      +E+ L  Q++S L   D +   +P  +LAHHW       +W
Sbjct: 124 RIPYYRPLDPLQPGFLPGRAEQHLAGQVFSGLTRFDRDSQ-YPCGDLAHHWEVSADGLRW 182

Query: 182 TFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLERPD 241
            FY+R  L +HNG  +D   +     +L +L         ++ I+   P  + F L RPD
Sbjct: 183 DFYIRSTLHWHNGDAVDTAQLHERLERLLTLPALSKLFISVARIEVTHPQCLTFLLHRPD 242

Query: 242 PGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFYGC 301
              A  ++            +Y        +P+IG GPF +   T   ++L++   ++  
Sbjct: 243 YWLAHRLA------------SYCSGLAHPDLPLIGTGPFRLALFTPELVRLESHDHYHLS 290

Query: 302 RALTDRVTIWQVDEERLSRPLIETNQPEANTTSHH--QVSLSDSPHLTSAAQQQSRVEDG 359
             L   +  W +  +  ++ L         T+  H  Q+++     L + +Q  S +  G
Sbjct: 291 HPLLKAIEFW-ITPQLFAQDL--------GTSCRHPVQIAIGKPEELATLSQVSSGISLG 341

Query: 360 -CLMVLFNQRAKQPLDQAQAHRLSELLNPNTIEQDIRCHGEMFGVEPAHNLLPSWRAVLK 418
            C + L   +    L+  QA RL  +++  ++ + +     +  + P+  LLP W     
Sbjct: 342 FCYLTL---KKGSRLNVQQARRLIHIIHHTSLLKTLPVDENL--IMPSQGLLPGWTIPQW 396

Query: 419 SPAPKVALPTQLTLALYNYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKGELD 478
               +  LP +LTLA +    L T A+ +   LA  G  L++  +  +  +      + D
Sbjct: 397 QDVDETPLPKKLTLAYHLPVELHTMAEQLRHYLATLGCELTLIFHNAKNWDNCPALAQAD 456

Query: 479 ETLVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYLDQL 538
             L++ +  + +    +    L  + I            L   L+A++ Q         L
Sbjct: 457 --LMMGDRLIGEAPEYTLEQWLRCDQIWSHVLDAPAFSHLQATLDALQIQPNEKDRRAAL 514

Query: 539 EPIASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVW 584
           + + + L+ ++ L PLF++   +     ++ V LT  GW +    W
Sbjct: 515 QQVFANLMDDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFSEAW 560