Pairwise Alignments

Query, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  199 bits (507), Expect = 2e-55
 Identities = 160/585 (27%), Positives = 259/585 (44%), Gaps = 46/585 (7%)

Query: 6   LLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAGRHHRS 65
           L + + RL     G    TTL ELA+ L  S RH R LL  +   GWLTW  + GR  RS
Sbjct: 6   LQQQFIRLWQCCDGKTQDTTLNELADLLNCSRRHMRTLLNTMQARGWLTWEAEVGRGKRS 65

Query: 66  SLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGRLHIQL 125
            L        L++Q A   ++  + ++ L  L  D+ A  ++L    G + ++GR  +++
Sbjct: 66  RLTFLYTGLALQQQRAEDLLEQDRIDQ-LVQLVGDKSAVRQMLISHLGRSFRQGRHILRV 124

Query: 126 TYKRPFEPLLPHLPQRSSERFLIRQIYSCLVS-SDANGHVHPELAHHWHYDPHTWQWTFY 184
            Y RP   LLP    R SE  + RQI+S L   ++ NG +  ++AHHW        W FY
Sbjct: 125 LYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEENGELEADIAHHWQ-QISPLLWRFY 183

Query: 185 LRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLERPDPGF 244
           LRP + FH+G  L+   ++S   ++++L  +    +HI+ I +PT + +  +L +PD   
Sbjct: 184 LRPGIHFHHGRELEMEDVISSLTRINTLPLY----SHITKIDSPTAWTLDIHLSQPDRWL 239

Query: 245 AGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFYGCRAL 304
             ++  V   I P      + F        IG GP+ V+ +T N+LK+ AF  ++G RAL
Sbjct: 240 PWLLGQVPAMILPRKWETLANFASHP----IGTGPYAVRRNTPNQLKILAFDDYFGYRAL 295

Query: 305 TDRVTIWQVDEERLSRPLIETNQPEANTTSHHQVSLSDSPHLTSAAQQQSRVEDGCLMVL 364
            D V +W + +         + +P           + + P        +SR+E+GC  +L
Sbjct: 296 IDEVNVWVLPD--------ISEEPACGL-------MLEGPIQGGEKAIESRLEEGCYYLL 340

Query: 365 FNQRAKQPLDQAQAHRLSELLNPNTI--EQDIRCHGEMFGVEPAHNLLPSWRAVLKSPAP 422
           F+ R  +         +S +L+P  +    D       F   PA+ LLP W      P  
Sbjct: 341 FDARTPRGAHPQVREWVSHVLSPTNLLYHADEPLQQLWF---PAYGLLPRWHHARPGPGE 397

Query: 423 KVALPTQLTLALY-NYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKGELDETL 481
           K A    LTL  Y  +   +  A+ ++ LLA   + L I    Y + +     GE++  +
Sbjct: 398 KPAGLETLTLTFYREHIEHRVIARIMSALLAEHQVHLHIQEIDYDQWH----AGEIESDI 453

Query: 482 VLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYLDQLEPI 541
            L + N       S FA L   P+L  C  +D   W          +  L  +  Q    
Sbjct: 454 WLNSANFTLPLDFSLFAHLCEVPLLQNCIPRD---WQGDAAQWRAGEMNLANWCQQ---- 506

Query: 542 ASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSA 586
              L++   + PL HH   ++    +  + +   GW D ++ W A
Sbjct: 507 ---LLANKAIVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFA 548