Pairwise Alignments

Query, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  173 bits (438), Expect = 2e-47
 Identities = 152/586 (25%), Positives = 246/586 (41%), Gaps = 34/586 (5%)

Query: 4   LNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAGRHH 63
           LN L  Y RL     G     T+ ELAER F S RH R LL +  + GWL W  ++GR  
Sbjct: 4   LNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGK 63

Query: 64  RSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGRLHI 123
           R  L      E L+  +  + ++ GK +  L +          LL+   G   Q     +
Sbjct: 64  RGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTL 123

Query: 124 QLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVSSDANGHVHP--ELAHHWHYDPHTWQW 181
           ++ Y RP EPL P      +E+ L  QI+S L   D N    P  +LAHHW       +W
Sbjct: 124 RIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFD-NNTQRPIGDLAHHWETSTDGLRW 182

Query: 182 TFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLERPD 241
            FYLR  L +HNG  + A+ +      L  L         +  I+   P  + F L RPD
Sbjct: 183 DFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPD 242

Query: 242 PGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFYGC 301
              A  ++         S L + QF      P+IG GPF + + T   ++L++   ++  
Sbjct: 243 YWLAHRLASY------CSHLAHPQF------PLIGTGPFRLTQFTAELVRLESHDYYHLR 290

Query: 302 RALTDRVTIWQVDEERLSRPLIETNQPEANTTSHH--QVSLSDSPHLTSAAQQQSRVEDG 359
             L   V  W      ++ PL E    +  T+  H  Q+++     L   +Q  S +  G
Sbjct: 291 HPLLKAVEYW------ITPPLFE---KDLGTSCRHPVQITIGKPEELQRVSQVSSGISLG 341

Query: 360 -CLMVLFNQRAKQPLDQAQAHRLSELLNPNTIEQDIRCHGEMFGVEPAHNLLPSWRAVLK 418
            C + L   R    L   QA ++  +++ + + Q +     +  +  +H LLP W     
Sbjct: 342 FCYLTL---RKSPRLSLWQARKVISIIHQSGLLQTLEVGENL--ITASHALLPGWTIPHW 396

Query: 419 SPAPKVALPTQLTLALYNYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKGELD 478
               +V LP  LTL  +    L T A+ +   LAA+G  L+I  +  +  +   L+   D
Sbjct: 397 QVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHAD 456

Query: 479 ETLVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYLDQL 538
             L++ +  + +    +    L  +P+            L   L+AV+         + L
Sbjct: 457 --LMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNAL 514

Query: 539 EPIASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVW 584
           + + S L++++ L PLF++   +     ++ V LT  GW +    W
Sbjct: 515 KAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAW 560