Pairwise Alignments

Query, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., HTH-type transcriptional regulator SgrR from Erwinia tracheiphila SCR3

 Score =  215 bits (547), Expect = 4e-60
 Identities = 171/593 (28%), Positives = 279/593 (47%), Gaps = 51/593 (8%)

Query: 1   MSDLNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAG 60
           MS   L + + RL     G   +TTL +LA RL  S RH R+LL  + Q GWL W  +AG
Sbjct: 1   MSSPRLKQQFIRLWQSCEGQSQQTTLNDLALRLNCSRRHMRSLLNAMQQQGWLEWHAEAG 60

Query: 61  RHHRSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGR 120
           R  RS L        L++Q A   ++  + ++ L  L  D+ A  ++L    G + ++G+
Sbjct: 61  RSKRSQLNFLYTGLALQQQRAEDLLEQDRIDQ-LVQLVGDKNAVRQMLVSRLGRSFRQGK 119

Query: 121 LHIQLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVS-SDANGHVHPELAHHWHYDPHTW 179
             +++ Y R    LLP  P R SE  L RQI+S L   ++ NG +  ++AHHW       
Sbjct: 120 HILRILYYRSLLNLLPGTPLRRSETHLARQIFSGLTRINEENGEIEADIAHHWQ-QITPL 178

Query: 180 QWTFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLER 239
            W F+LRP + FH+G  L+   +++   +L+S   +    A++  I + +P+ +   L +
Sbjct: 179 HWRFFLRPAIHFHHGRELEMADVIATLERLTSQPLY----ANLHKISSSSPWSLDIYLHQ 234

Query: 240 PDPGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFY 299
           PD     ++  V   I P    + + F        IG GP++V  + + +L+++AF  ++
Sbjct: 235 PDHWLPWLLGSVSSMILPKEWPSIANFAR----QPIGTGPYQVVRNQQRQLRIEAFDDYF 290

Query: 300 GCRALTDRVTIWQVDEERLSRPLIETNQPEANTTSHHQVSLSDSPHLTSAAQQQSRVEDG 359
           G RAL D V IW + E  +S  L+        +      SLSD         ++SR+E+G
Sbjct: 291 GYRALIDEVNIWVLPE--ISEELVYA------SVRLQSDSLSDK-------SEESRLEEG 335

Query: 360 CLMVLFNQRAKQPLDQAQAHRLSELLNPNTI--EQDIRCHGEMFGVEPAHNLLPSW---R 414
           C  +LF+QR+++  ++     ++ L NP  +  + DI      F   PA+ LLP W   R
Sbjct: 336 CYFLLFDQRSERGRNEQVRRWVNSLCNPVALLNQADIGYQRYWF---PAYGLLPRWHHQR 392

Query: 415 AVLKSPAPKVALPTQLTLALY-NYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRAL 473
            + +S  P  A  T LTL  Y ++   Q  A  +  LLAA G+TL      Y   +    
Sbjct: 393 DLTRSTKP--AGLTSLTLTWYDDHIEYQAIANTLEPLLAAGGVTLVTRQVDYATWH---- 446

Query: 474 KGELDETLVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQ 533
           +G+ +  + L + N       S FA+L+  P++H C + +   W             L +
Sbjct: 447 RGDAESDIWLGSANFTLPLAFSLFALLYEIPLVHHCVATN---WETDVQKWRENNLTLTE 503

Query: 534 YLDQLEPIASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSA 586
           +       +  ++    L PLFHH   L     + DV +   GW D ++ W A
Sbjct: 504 W-------SKRIIDSHTLHPLFHHWLLLEGIRTMRDVKMNTLGWFDFKSAWFA 549