Pairwise Alignments

Query, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., ABC-type uncharacterized transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  155 bits (392), Expect = 4e-42
 Identities = 139/587 (23%), Positives = 241/587 (41%), Gaps = 30/587 (5%)

Query: 1   MSDLNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAG 60
           M  LN L  Y RL    +G   + T+ ELA R F S RH R LL +  + GWL+W  ++G
Sbjct: 1   MRQLNRLNQYHRLWQPSLGATQQVTIGELAARCFCSERHVRTLLRQAQEAGWLSWRAQSG 60

Query: 61  RHHRSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGR 120
           R  R  L  H   E L+  +  + ++ G+   AL +      A   LL    G   Q   
Sbjct: 61  RGKRGELTFHVAPESLRNAMMEEALKSGQQHNALELAQLAPEALRSLLHPFLGGQWQNDT 120

Query: 121 LHIQLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVSSDAN-GHVHPELAHHWHYDPHTW 179
             +++ Y R  EPL P      +E+ L  Q++S L   + N      +LAHHW       
Sbjct: 121 PTLRIPYYRSLEPLQPGFLPGRAEQHLAGQVFSGLTRFNGNSSEPAGDLAHHWDVSDDDL 180

Query: 180 QWTFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLER 239
           +W FY+R  L +HNG  ++   +      L +L   R     +  I+   P  + F L +
Sbjct: 181 RWHFYIRSTLHWHNGDKIETAQLQRSLTALLTLPALRTLFQSVLWIETTHPQCLTFALHQ 240

Query: 240 PDPGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFY 299
           PD      ++         S+L +         P +G GPF +     + ++L++  Q++
Sbjct: 241 PDYWLPHRLATY------CSRLAHPDH------PAVGSGPFRLAAFEPDLVRLESHEQYH 288

Query: 300 GCRALTDRVTIWQVDEERLSRPLIETNQPEANTTSHH--QVSLSDSPHLTSAAQQQSRVE 357
               L   +  W      ++  L + +     T+  H  Q+++ ++  L S     S   
Sbjct: 289 LSHPLLKAIEYW------ITPQLFDYS---LGTSCRHPVQIAIGEADELESLRLVSSSTS 339

Query: 358 DGCLMVLFNQRAKQPLDQAQAHRLSELLNPNTIEQDIRCHGEMFGVEPAHNLLPSWRAVL 417
            G   +   Q A+  L + QA RL  +++ + +   +  +  +  + P   LLP W    
Sbjct: 340 LGFCYLTLKQSAR--LSEIQAKRLINIIHLSRLLHTLPLNEGL--ITPTQELLPDWTIPE 395

Query: 418 KSPAPKVALPTQLTLALYNYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKGEL 477
                 V LP  LTL  +    L T A  +   LA QG  L++  +  +  +      + 
Sbjct: 396 WPDLSDVTLPEALTLVYHLPVELHTMASQLKAYLALQGCELTVIFHDAKTWDGCLELADA 455

Query: 478 DETLVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYLDQ 537
           D  +++ +  + +    +    L  + +     S      L   L+AV+ QA+       
Sbjct: 456 D--IMMGDRLIGEAPEYTLEQWLRCDALWPHVLSAPAYAHLQATLDAVQTQAEARDRHAG 513

Query: 538 LEPIASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVW 584
           L+ I + L+  + L PLF+++  +     ++ + L   GW D    W
Sbjct: 514 LQAIFNRLMESAVLTPLFNYQYQISAPPGVNGIRLNTRGWFDFTEAW 560