Pairwise Alignments

Query, 587 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., DNA-binding transcriptional regulator SgrR from Escherichia coli ECRC62

 Score =  209 bits (531), Expect = 3e-58
 Identities = 160/591 (27%), Positives = 267/591 (45%), Gaps = 49/591 (8%)

Query: 1   MSDLNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAG 60
           M    L + + RL     G    TTL ELA  L  S RH R LL  +   GWLTW  + G
Sbjct: 1   MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG 60

Query: 61  RHHRSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGR 120
           R  RS L        L++Q A   ++  + ++ + ++  D+    ++L    G + ++GR
Sbjct: 61  RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLV-GDKATVRQMLVSHLGRSFRQGR 119

Query: 121 LHIQLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVS-SDANGHVHPELAHHWHYDPHTW 179
             +++ Y RP   LLP    R SE  + RQI+S L   ++ NG +  ++AHHW       
Sbjct: 120 HILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQ-QISPL 178

Query: 180 QWTFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLER 239
            W F+LRP + FH+G  L+ + +++   ++++L  +    +HI+DI +PTP+ +  +L +
Sbjct: 179 HWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLY----SHIADIVSPTPWTLDIHLTQ 234

Query: 240 PDPGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFY 299
           PD     ++  V   I P      S F    I    G GP+ V  +T N+LK++AF  F+
Sbjct: 235 PDRWLPLLLGQVPAMILPREWETLSNFASHPI----GTGPYAVIRNTTNQLKIQAFDDFF 290

Query: 300 GCRALTDRVTIW---QVDEERLSRPLIETNQPEANTTSHHQVSLSDSPHLTSAAQQQSRV 356
           G RAL D V +W   ++ +E     +++  Q E                     + +SR+
Sbjct: 291 GYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEK-------------------EIESRL 331

Query: 357 EDGCLMVLFNQRAKQPLDQAQAHRLSELLNPNTIEQDIRCHGEMFGVEPAHNLLPSWRAV 416
           E+GC  +LF+ R  +  +Q     +S +L+P  +        +     PA+ LLP W   
Sbjct: 332 EEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWF-PAYGLLPRWHHA 390

Query: 417 LKSPAPKVALPTQLTLALY-NYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKG 475
               + K      LTL  Y +++  +  A  + ++LA+Q +TL I    Y + +     G
Sbjct: 391 RTIKSEKPTGLESLTLTFYQDHSEHRVIAGIMQQILASQQVTLEIKEIDYDQWH----TG 446

Query: 476 ELDETLVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYL 535
           E++  + L + N       S FA L   P+L  C   D   W          +  L  + 
Sbjct: 447 EIESDIWLNSANFTLPLDFSVFAHLCEVPLLQHCIPID---WQADAARWRNGEMNLANWC 503

Query: 536 DQLEPIASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSA 586
            Q       LV+   + PL HH   ++    +  + +   GW D ++ W A
Sbjct: 504 QQ-------LVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFA 547