Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  237 bits (604), Expect = 1e-66
 Identities = 135/343 (39%), Positives = 209/343 (60%), Gaps = 2/343 (0%)

Query: 249 LLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGD--LTQRIPVTGNDEFSDIAKY 306
           L+GA A ++   L  L A  V   ++++A+    IA+GD  LTQR+     DE  ++A +
Sbjct: 363 LVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELANW 422

Query: 307 VNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTAT 366
            NR +   Q  I+  + S++     A++++A+A QT + +  Q  +  Q+A A ++ +AT
Sbjct: 423 FNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSAT 482

Query: 367 VHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSEDI 426
            H+VA SA  AA A+  A+Q+A +G  ++E++   I  L+ ++ K +  ++ LA +SE I
Sbjct: 483 AHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQI 542

Query: 427 GSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQTV 486
           GSV++VI+SI+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ+S ++I   +
Sbjct: 543 GSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVI 602

Query: 487 QRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQIATASEEQS 546
           +R+Q  +R     +    S A     +   A  AL +I+  V  IS MN QIA+A+E+QS
Sbjct: 603 ERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQS 662

Query: 547 AVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQ 589
           AV EE+N+N+  I  ++      A +S+  + +L  LA    +
Sbjct: 663 AVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMK 705



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 482 ILQTVQRLQQSSRDSANLIEQGVSGA--SKAVEKARLA----GTALSQITANVDRISTMN 535
           + +T Q  Q  S  S+ ++   V     SKA E+A L     G  L  +TA  D++  + 
Sbjct: 31  LYETNQNDQLISDSSSRMLTSSVQSLLQSKAGEQAVLLQKTFGENLLVVTALADQVKDLR 90

Query: 536 TQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSE 575
              A  + E  A+ EE+N+++ T  E  N   LG   S E
Sbjct: 91  ALAAKRALEPGALREELNQSLKTTFE-RNSKVLGIWLSFE 129



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 26/139 (18%)

Query: 466 DEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQIT 525
           DE+  LA+       ++  T+ +++QS  ++     +G +  S A+  AR     +    
Sbjct: 414 DELGELANWFNRFLDKLQPTIAQIKQSITEA-----RGTADQSSAI--ARQTSEGMQVQF 466

Query: 526 ANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSS--------EAT 577
             +D       Q+ATAS E SA   ++  +    +  +   A GA QS+        ++T
Sbjct: 467 REID-------QVATASNEMSATAHDVANS----ASNAASAARGADQSAREGMSIIEQST 515

Query: 578 LELARLAESMQQEVARYNA 596
            ++  LAE + + V    A
Sbjct: 516 RDITSLAEEVSKAVGEVEA 534