Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  247 bits (630), Expect = 1e-69
 Identities = 152/431 (35%), Positives = 245/431 (56%), Gaps = 1/431 (0%)

Query: 164 QEKAVIQTLKEKLDQVTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFLD 223
           +E A+ +T    LD   +   +  L   K  K D    ++   I    +++ +     + 
Sbjct: 110 EEAALYKTFMVTLDNYLKAQAD-MLALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLIA 168

Query: 224 IQTQEGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHI 283
           I   + K   + +    +  I  V  +   A ++T  LA L+ + +   +      A  I
Sbjct: 169 INVADAKTADTDAGQSYDGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEVAETI 228

Query: 284 AAGDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTK 343
           A G+L++ I   G DE + +   +  +  + ++ I     S + LA+AAEE +AV  +  
Sbjct: 229 AGGNLSKAIEDDGKDEPARLLGALATMQANLRQTIQHIAGSATQLASAAEELSAVTEEAS 288

Query: 344 QNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIE 403
           + + +Q ++  Q A A+++ TA V EVA++A   +EAS ++ QAA +GR  V E +  I+
Sbjct: 289 KGLQQQNNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQSNQAAREGRDRVVETVGAIQ 348

Query: 404 GLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAV 463
            ++ D+Q   A ++ LA    DIG V+DVI++I+EQTNLLALNAAIEAARAGE GRGFAV
Sbjct: 349 TMTQDVQNTAAMIEGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAV 408

Query: 464 VADEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQ 523
           VADEVR LA RT +ST++I + V  +Q  + ++   ++Q        +E AR AG AL Q
Sbjct: 409 VADEVRALAHRTAQSTQEIEKMVAGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQ 468

Query: 524 ITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARL 583
           IT ++  I+  N  IA+ASEEQ+ V+ E+++N++ I +++ Q+A GA Q+S A+ EL+RL
Sbjct: 469 ITQSISLINERNLVIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRL 528

Query: 584 AESMQQEVARY 594
           A  +   VAR+
Sbjct: 529 AVDLNGMVARF 539



 Score = 46.2 bits (108), Expect = 3e-09
 Identities = 73/302 (24%), Positives = 130/302 (43%), Gaps = 22/302 (7%)

Query: 309 RIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTATVH 368
           +I  S  E+ ++   SV++L    E    + + + + +V ++  + Q A           
Sbjct: 36  QIRQSSVEMTATQLPSVTSLGVITENVLRLRILSFRVLVNREPASLQEAETRIGVLVDKV 95

Query: 369 EVAQSAGLAAEASEEAEQAAMQGRKVVEENI--AMIEGLSNDLQKMLAAMQLLAKDSEDI 426
           + AQ++  A  A  E E A  +   V  +N   A  + L+   Q  +  M+ L       
Sbjct: 96  KTAQASYAALPAGPE-EAALYKTFMVTLDNYLKAQADMLALSKQGKVDEMRALINSR--- 151

Query: 427 GSVVDVIQSISEQTN-LLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQT 485
             + D    + EQ N L+A+N A       + G+ +      V  ++      T  +   
Sbjct: 152 --IKDGTDQMGEQLNKLIAINVADAKTADTDAGQSYDGAITGVIAVSVAAALLTVLLAWL 209

Query: 486 VQRLQQSSRDSANLIEQGVSGA--SKAVEK------ARLAGTALSQITAN----VDRIST 533
           + R   +    A  + + ++G   SKA+E       ARL G AL+ + AN    +  I+ 
Sbjct: 210 LTRSIVTPLRKAVEVAETIAGGNLSKAIEDDGKDEPARLLG-ALATMQANLRQTIQHIAG 268

Query: 534 MNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVAR 593
             TQ+A+A+EE SAVTEE +K +   +   +Q A    + + A  E+AR A S  +  ++
Sbjct: 269 SATQLASAAEELSAVTEEASKGLQQQNNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQ 328

Query: 594 YN 595
            N
Sbjct: 329 SN 330