Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  250 bits (639), Expect = 9e-71
 Identities = 169/538 (31%), Positives = 294/538 (54%), Gaps = 17/538 (3%)

Query: 60  IVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRILDELGSARSQLL-LAF 118
           ++ L+V ++       +  M+  SD +E+ +   +   +  G +  +L   R+  L L  
Sbjct: 18  VLALMVFALGGFALLQMANMRQQSDQVENNW---LPSVMAVGDMSQDLLRIRALTLRLLV 74

Query: 119 QHDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILATVLDVQEKAVIQTLKEKLDQ 178
             DP +         +  + + +     NLHR         VL  ++    +   E+   
Sbjct: 75  NRDPQA---------LAQNEQKLTEIKANLHRARTLYQGLIVLPAEQVLFDRFKAEEARY 125

Query: 179 VTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFLDIQTQEGKNNFSASQH 238
           + RQ  E  +   KA + + A  ++   +N L +E+       + +         S +Q 
Sbjct: 126 LERQ--EQVVTLSKANQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAASLAQS 183

Query: 239 EINQF-IWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVTGN 297
             +Q  IW++ ++   AL VT  LA+L+ + +   +      A  +A+GDLT  I V G 
Sbjct: 184 VFSQSRIWVIGMIVLTAL-VTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEISVCGR 242

Query: 298 DEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIA 357
           DE + + + +  +  + ++ I     S + LA+A+EE + V     + + +Q  + +Q A
Sbjct: 243 DEPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEIEQAA 302

Query: 358 AAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQ 417
            A++Q TA V EVA +A   ++AS E+++ A +GR+ V++ +  IE L+ D+   +  ++
Sbjct: 303 TAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQVE 362

Query: 418 LLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQE 477
            LA+    I  V+DVI+SI+EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTQ+
Sbjct: 363 DLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQ 422

Query: 478 STKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQ 537
           ST++I Q +  +QQ +  + + ++Q  + A   ++ A+ AGTAL +I +    I+  N  
Sbjct: 423 STQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINERNLV 482

Query: 538 IATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVARYN 595
           IA+ASE+Q+AV  E+++N++ I ++++QT+ GA Q+S A+ +L+RLA  +   VAR++
Sbjct: 483 IASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDLNTLVARFS 540