Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  266 bits (680), Expect = 2e-75
 Identities = 183/549 (33%), Positives = 299/549 (54%), Gaps = 22/549 (4%)

Query: 52  SVGLRLKLIVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRILDEL--GS 109
           ++  R  L   LI V +  LG   L  M S  DS  ++  + +  +IR G  + EL    
Sbjct: 7   NIAPRAALGFALIAVLVALLGVFALGQMSSIRDSEVAVENRWLP-SIRGGDEIRELMLRI 65

Query: 110 ARSQLLLAFQHDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILA--TVLDVQEKA 167
               L +A   DP++             +   +  +    + +  +I A   ++D  E  
Sbjct: 66  RTISLRMALDQDPAN-------------IATYRGQMDTRDKELSEKIAAYDKLVDTAEGQ 112

Query: 168 VIQTLKEKLDQVTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFLDIQTQ 227
            +    +K     R G   +    +  K D    +LL  +  + +   K      D+  +
Sbjct: 113 QLYDQFKKTFAAYRTGIAQSFTLAEQGKRDELTKLLLVDMKTVVDGSGKQLNDLADLFAR 172

Query: 228 E--GKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAA 285
           +   ++  SA+ +E ++ I  VSL    A + T +LA+L+ + +   +     +A  +A 
Sbjct: 173 QVAAESEKSAAHYETSRTI--VSLFIGLAALATVALAMLLTRSIVRPLSSAVDAAESVAK 230

Query: 286 GDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQN 345
           GDLT+ I   GNDE S + K +  +  + +E +     S + LATAA+E +AV + + Q 
Sbjct: 231 GDLTRPIETHGNDEVSRLLKALATMQQNLRETLQGISGSATQLATAADELSAVTVDSTQG 290

Query: 346 IVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGL 405
           + EQ ++ +Q A A+++ TA V EVA++A   ++A+ ++ Q+A  G++ V E  + I  L
Sbjct: 291 LQEQNNEIEQAATAVNEMTAAVEEVARNAVSTSDATRQSSQSAQLGQERVSETASAINAL 350

Query: 406 SNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVA 465
           ++D+Q     +Q LA  S+DIG V+DVI++I+EQTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 351 ASDVQNTGELVQSLANQSQDIGKVLDVIRAIAEQTNLLALNAAIEAARAGESGRGFAVVA 410

Query: 466 DEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQIT 525
           DEVR LA RTQ+ST++I Q VQ ++  S  +   ++   S A+  +  A  AG AL  IT
Sbjct: 411 DEVRALAYRTQQSTQEIEQMVQGMRSGSSQALESMQASASRAASTLVLAERAGEALVTIT 470

Query: 526 ANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAE 585
           A+V  I   N  IA+A+EEQ+ V  E+++N++ I ++S ++A GA Q+S ++ EL++LA 
Sbjct: 471 ASVHEIHERNLVIASAAEEQAQVAREVDRNLVNIRDLSVRSAAGADQTSASSHELSQLAN 530

Query: 586 SMQQEVARY 594
           ++Q  V R+
Sbjct: 531 ALQGMVRRF 539