Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  261 bits (666), Expect = 7e-74
 Identities = 176/539 (32%), Positives = 302/539 (56%), Gaps = 19/539 (3%)

Query: 60  IVVLIVVSILFLGFKGLTGMQSASDSIESLYTKGMQHTIRAGRILDELGSARSQLLLAFQ 119
           ++ L+V ++       ++ M++ SD +++ +   +       + +  L +   +LLL   
Sbjct: 18  LLALMVFALGAFALLQMSNMRAQSDEVDNNWLPSVMAVGEMSQDMLRLRALTMRLLL--N 75

Query: 120 HDPSSKYALMHDHPITMHVEGIQTSLTNLHRIVDNEILATVLDVQEKAVIQTLK---EKL 176
            DP    AL  +      ++ +++ L+   +  D    A ++  +E+ + +  K    K 
Sbjct: 76  RDPK---ALEQN---VAKLDELRSGLSEAQQRYD----ALIVLPEERVLFERFKGTEHKY 125

Query: 177 DQVTRQGFEPALQQLKAEKYDAANLILLQVINPLYNEIKKAAEAFLDIQTQEGKNNFSAS 236
            ++  Q  + + Q   AE    A  IL   ++PL +EI       +++  Q       A+
Sbjct: 126 LELQAQVLQLSAQNRVAE----AATILNDQMSPLADEIAATLRELVELNKQNAGLATEAA 181

Query: 237 QHEINQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVTG 296
           +    Q    V+++ A A ++T  LALL+ + +   +    S A  +A GDLT  I +TG
Sbjct: 182 RLVFKQSRLWVAVMIAMAALITVGLALLLTRSIVVPLSQSLSVAEVVAGGDLTGDIHITG 241

Query: 297 NDEFSDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQI 356
            DE + + + +  +  + ++ I     S + LA+AAEE ++V     + + +Q  + +Q 
Sbjct: 242 KDEPARLLQALKSMQHNLRDTIRRISESSTQLASAAEELSSVTEDATRGLHQQSQEIEQA 301

Query: 357 AAAIHQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAM 416
           A A++Q TA V EVA +A   +EAS E+++ A QGR+ V++ +  IE L+ D+    A +
Sbjct: 302 ATAVNQMTAAVEEVANNAVATSEASRESDRIARQGREQVQQTVTSIEFLAGDVTNNAAQV 361

Query: 417 QLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQ 476
           + LA+    I  V+DVI+SI+EQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTQ
Sbjct: 362 EALAQKVHGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQ 421

Query: 477 ESTKQILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNT 536
           +ST++I Q +  +QQ +  + + ++Q  S A   +E A+ AG+AL +I +    I+  N 
Sbjct: 422 QSTQEIEQMIGGIQQGTDSAVSSMQQSNSRARSTLELAKSAGSALEEIASAFTLINERNL 481

Query: 537 QIATASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVARYN 595
            IA+ASEEQ+AV  E+++N++ I +++ QT+ GA Q+S A+ EL++LA  +   VAR++
Sbjct: 482 VIASASEEQAAVAREVDRNLMNIRDLAMQTSAGANQTSAASQELSKLAVDLNGMVARFS 540