Pairwise Alignments

Query, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  228 bits (581), Expect = 6e-64
 Identities = 132/354 (37%), Positives = 215/354 (60%), Gaps = 3/354 (0%)

Query: 241 NQFIWMVSLLGAFALIVTTSLALLIAKRVNNAVHHLASSATHIAAGDLTQRIPVTGNDEF 300
           N F+ +V ++   ++ V   +  +  + +   ++ +    T  ++GDLT R+  +  DEF
Sbjct: 322 NTFVIVVVII---SIAVAAFIGYVTVRAITRPLYRVNELLTVASSGDLTHRLDDSAQDEF 378

Query: 301 SDIAKYVNRIVTSFQEVISSNRHSVSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAI 360
             +A+  N ++ + +E+I++       LA A+E+ +AV  QT  +I +Q+SQ  Q+A A 
Sbjct: 379 GLLARNCNTLIGNLKELITAINVRAEQLAAASEQTSAVTAQTTHSIQDQKSQIGQVATAT 438

Query: 361 HQFTATVHEVAQSAGLAAEASEEAEQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLA 420
            +  +T   V Q+A         A+  A   R++  EN   IE LS D+Q+    +  L 
Sbjct: 439 TEMHSTSQLVVQNAEDTLSQIRHADAEAENVRQISLENKNTIEILSRDVQEAADVINKLH 498

Query: 421 KDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTK 480
           +DS  IG ++DVI+ +++QTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQEST+
Sbjct: 499 QDSASIGGILDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTQ 558

Query: 481 QILQTVQRLQQSSRDSANLIEQGVSGASKAVEKARLAGTALSQITANVDRISTMNTQIAT 540
           +I   ++ LQ  +  + +++ QG    +  V +   A  AL  I+  V +   +++QI  
Sbjct: 559 EINAMIEVLQAGAEKAVSVMNQGKEQTAACVAQTEKATQALDIISDAVHKAHDVSSQIEQ 618

Query: 541 ASEEQSAVTEEINKNIITISEISNQTALGAQQSSEATLELARLAESMQQEVARY 594
           ++ EQ+ V++EI++ + TI  I+ +T  GAQQ+SE++ E+ARLAE +QQ + ++
Sbjct: 619 SAREQNTVSQEISEKLETIVGIAEETTAGAQQTSESSHEVARLAEELQQSIRQF 672



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 45/267 (16%), Positives = 105/267 (39%), Gaps = 21/267 (7%)

Query: 344 QNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEAS--EEAEQAAMQGRKVVEENIAM 401
           + +V  Q+   ++   + +    + ++ Q+AG   ++   ++           ++ N  +
Sbjct: 205 ETLVRSQTLGNEVDLVVEKVVTQLSDMMQTAGGRDDSGTLDDINDLVNNAINAIKANDGV 264

Query: 402 IEGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLALNAAIEAARAGEQGRGF 461
           ++   + L++   A + L     +I   V  ++++    +  A +   +   A   G  F
Sbjct: 265 VQLHVDRLERRNDAEKALNASDSNIAQAVVALENLLNLADKKASHVESQVNGAIATGNTF 324

Query: 462 AVVAD--EVRTLASRTQESTKQILQTVQRLQQ-----SSRDSANLIEQGVSGASKAVEKA 514
            +V     +   A     + + I + + R+ +     SS D  + ++         +  A
Sbjct: 325 VIVVVIISIAVAAFIGYVTVRAITRPLYRVNELLTVASSGDLTHRLDDSAQDEFGLL--A 382

Query: 515 RLAGTALSQITANVDRISTMNTQIATASEEQSAVTEEINKNI----------ITISEISN 564
           R   T +  +   +  I+    Q+A ASE+ SAVT +   +I           T +   +
Sbjct: 383 RNCNTLIGNLKELITAINVRAEQLAAASEQTSAVTAQTTHSIQDQKSQIGQVATATTEMH 442

Query: 565 QTALGAQQSSEATLELARLAESMQQEV 591
            T+    Q++E TL   R A++  + V
Sbjct: 443 STSQLVVQNAEDTLSQIRHADAEAENV 469