Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., excinuclease UvrABC protein B from Pseudomonas putida KT2440

 Score = 46.2 bits (108), Expect = 4e-09
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 29/189 (15%)

Query: 189 LLDEGFLTPAQLIDTPVMSYDFSQLKP------ANTGRYRESELDLVIEQSQRAT----P 238
           L++ GF  P+ L + P+   ++  + P      A  G Y       V+EQ  R T    P
Sbjct: 360 LVEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDP 419

Query: 239 QI------------VAQIIELAKARQGVMIFAATVRHAEEIYRLLPTEHAAL--VIGDTP 284
           Q+            +++I +   A + V+    T R AE++   L      +  +  D  
Sbjct: 420 QVEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDID 479

Query: 285 TPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQ-----QIVGR 339
           T ER  II+  +      LV +++L  G D P V L+AIL   +   L       Q +GR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 340 GLRLAAGKS 348
             R   G++
Sbjct: 540 AARNLNGRA 548



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 16/70 (22%), Positives = 35/70 (50%)

Query: 8  QADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVEQNHAK 67
          Q ++++ +V       +   ++  TG+GK+  IA + +  +   LVLA  K L  Q + +
Sbjct: 16 QPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLAPNKTLAAQLYGE 75

Query: 68 YEGYGLTGAI 77
          ++ +    A+
Sbjct: 76 FKAFFPNNAV 85