Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1169 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 115/444 (25%), Positives = 186/444 (41%), Gaps = 99/444 (22%)

Query: 4   LRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 58
           LR YQ D+V+AV           ++ + TG GK+   IA + RL +     RVL L   +
Sbjct: 444 LRYYQEDAVRAVEQAIVNGQQHILLAMATGTGKTRTAIALMFRLIQSQRFKRVLFLVDRR 503

Query: 59  ELVEQNHAKYEGYGLTGAIFSA-----GLGRK--ETDQQVVFASVQSVVRNLSEFQN--- 108
            L EQ    +E   + G  F++     GL  K  E   ++  A+VQS+V+   +      
Sbjct: 504 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 563

Query: 109 --QFSLLVIDECHR--VPD--------------DKNSSYQKVITHL------LELNPGMK 144
             ++  +V+DE HR  + D              D  S+Y++++ H       L   P + 
Sbjct: 564 VGRYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 623

Query: 145 VLGLTATP-YRLGMGWIYQYHTR---GLVRSEEP------RFFRDCIFELPIHYLLDEGF 194
            + +   P YR      Y Y T    G +  ++P      R  +D ++       L EG 
Sbjct: 624 TVDIFGEPVYR------YTYRTAVIDGYLIDQDPPIQIVTRNAQDGVY-------LSEGE 670

Query: 195 ----LTP-AQLI-DTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQIIELA 248
               L P  +LI DT     DF ++   N G        LVI    RA    + + ++  
Sbjct: 671 QVERLNPQGELINDTLADDQDF-EVADFNRG--------LVIPAFNRAVCGELTKYLD-P 720

Query: 249 KARQGVMIFAATVRHAEEIYRLLPT---------EHAALV--IGDTPTPER---DRIIQA 294
             +Q  ++F  T  HA+ +   L +         EH A++   GD     +     I++ 
Sbjct: 721 TGQQKTLVFCVTNAHADMVVDELRSAFKKKYPQLEHDAIIKITGDADKDAKKVQSMIVRF 780

Query: 295 FKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL--AAGKS---- 348
            K++    +V V +LTTG D P +  I  LR  +S  LY+Q+ GR  RL  + GK+    
Sbjct: 781 NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVKSRILYEQMKGRATRLCPSVGKTSFKI 840

Query: 349 -DCLVLDYAGNQYDLYQPEVGDPK 371
            DC+ +  +    D  +P V  P+
Sbjct: 841 FDCVDIYSSLESVDTMRPVVVRPQ 864