Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1170 a.a., endonuclease R (RefSeq) from Escherichia coli BW25113

 Score = 67.4 bits (163), Expect = 3e-15
 Identities = 106/437 (24%), Positives = 178/437 (40%), Gaps = 85/437 (19%)

Query: 4   LRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 58
           LR YQ D+V+AV     +     ++ + TG GK+   IA + RL +     R+L L   +
Sbjct: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504

Query: 59  ELVEQNHAKYEGYGLTGAIFSA-----GLGRK--ETDQQVVFASVQSVVRNLSEFQN--- 108
            L EQ    +E   + G  F++     GL  K  E   ++  A+VQS+V+   +      
Sbjct: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564

Query: 109 --QFSLLVIDECHR--VPD--------------DKNSSYQKVITHLLELNPGMKVLGLTA 150
             ++  +V+DE HR  + D              D  S+Y++++ H   +      + LTA
Sbjct: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-----IALTA 619

Query: 151 TP----YRLGMGWIYQYHTR-----GLVRSEEPRFFRDCIFELPIHYL---LDEG-FLTP 197
           TP     ++    +Y+Y  R     G +  ++P          PI  +     EG +L+ 
Sbjct: 620 TPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP----------PIQIITRNAQEGVYLSK 669

Query: 198 AQLID--TPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQIVAQIIELAKARQGVM 255
            + ++  +P        L+        +    LVI    RA    +   ++     Q  +
Sbjct: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD-PTGSQKTL 728

Query: 256 IFAATVRHAEEIYRLL---------PTEHAAL--VIGDTPTPER--DRIIQAFKQQQI-K 301
           +F  T  HA+ +   L           EH A+  + GD     R    +I  F ++++  
Sbjct: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788

Query: 302 FLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKS-------DCLVLD 354
            +V V +LTTG D P +  I  LR   S  LY+Q+ GR  RL    +       DC+ + 
Sbjct: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848

Query: 355 YAGNQYDLYQPEVGDPK 371
                 D  +P V  PK
Sbjct: 849 STLESVDTMRPVVVRPK 865