Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  711 bits (1835), Expect = 0.0
 Identities = 345/573 (60%), Positives = 435/573 (75%), Gaps = 2/573 (0%)

Query: 1   MYTLRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 60
           ++TLRPYQ ++V A +++FR+H TPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL
Sbjct: 2   IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61

Query: 61  VEQNHAKYEGYGLTGAIFSAGLGRKETDQQVVFASVQSVVRNLSEFQNQFSLLVIDECHR 120
           V QNHAKY+  GL   IF+AGL RKE+  +VVF SVQSV RNL  FQ +FSLL++DECHR
Sbjct: 62  VAQNHAKYQALGLEADIFAAGLKRKESHVKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121

Query: 121 VPDDKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVRSEEPRFFRDC 180
           + DD+ S YQ+++THL ++NP +++LGLTATP+RLG GWIYQ+H  G+VR +E   FRDC
Sbjct: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181

Query: 181 IFELPIHYLLDEGFLTPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVIEQSQRATPQI 240
           I+ELP+ Y++  G+LTP + +D PV+ YDFS+L+  + G + E++L+  +++ QR TP I
Sbjct: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241

Query: 241 VAQIIELAKARQGVMIFAATVRHAEEIYRLLPTEHAALVIGDTPTPERDRIIQAFKQQQI 300
           ++QI+E A  R+GVMIFAATV HA+EI  LLP E AAL+ GDTP  ERD +I+ FK Q+ 
Sbjct: 242 ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRF 301

Query: 301 KFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAAGKSDCLVLDYAGNQY 360
           ++LVNV+VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA GK+DCL+LDYAGN +
Sbjct: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361

Query: 361 DLYQPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDANGFLIEHYGRRCQGYFTDDETG 420
           DLY PEVG PK  SD+  + + CPACGF N FWGK  A+G LIEH+GRRCQG+F DD+ G
Sbjct: 362 DLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDD-G 420

Query: 421 EREHCGYRFRAKYCNECGADNDIAARICHECDTTLVDPDKKLKEALNLKDALVFECTDMS 480
            RE C +RFR K C +C A+NDIAAR C ECDT LVDPD  LK AL LKDALV  C+ MS
Sbjct: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480

Query: 481 LKVHKDAKGKSQLQVTYHGQDAVQVHQFWPLNTPRQKQQFHDQFVRPHLADKHRPFEAAT 540
           L+   D KG+  L++TY+ +D   V + + L TP Q+  F   F+RPH      P    T
Sbjct: 481 LQHGHDEKGE-WLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWIT 539

Query: 541 PAKVVDHQHRFRPPLFVIARKSGRFWTIRDKVF 573
            A ++  Q   R P FV+AR  G++W +R+KVF
Sbjct: 540 AADILAQQALLRHPDFVVARMKGQYWQVREKVF 572