Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 748 a.a., DEAD/DEAH box helicase from Escherichia coli ECRC99

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 88/386 (22%), Positives = 144/386 (37%), Gaps = 76/386 (19%)

Query: 1   MYTLRPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 60
           M  LR  Q ++V A++ Y        V+  PT  GK++  A +    +   L+L H  EL
Sbjct: 383 MGNLRAEQEEAVSALLRY-----DTGVLCAPTAFGKTVTAAAVIAKRKVNTLILVHRTEL 437

Query: 61  VEQNHAKYEGYGLTG-AIFSAGLGRKETDQQVVFASVQSVVR--NLSEFQNQFSLLVIDE 117
           ++Q   +   +   G +I   G G+ +    +  A VQS+ R   +      +  +++DE
Sbjct: 438 LKQWQERLAVFLQAGDSIGIIGGGKHKPCGNIDIAVVQSISRQGEVEPLVRNYGQIIVDE 497

Query: 118 CHRVPDDKNSSYQKVITHLLELNPGMKVLGLTATPYRLGMGWIYQYHTRGLVR------S 171
           CH +     S+       +L+      +LGLTATP R        +   G +R       
Sbjct: 498 CHHIGAVSFSA-------ILKETNARYLLGLTATPIRRDGLHPIIFMYCGAIRHTAVRPK 550

Query: 172 EEPRFFRDCIFELPIHYLLDEGFL-TPAQLIDTPVMSYDFSQLKPANTGRYRESELDLVI 230
           E P        E+ I      G L + A++ D                  +RE  LD   
Sbjct: 551 ESPH-----NLEVLIRSRFTSGHLPSDARIQDI-----------------FREIALD--- 585

Query: 231 EQSQRATPQIVAQIIELAKARQGVMIFAATVRHAEEIY---------------RLLPTEH 275
                 T  I  + ++     + V++      H +EI                RL   + 
Sbjct: 586 ---HDRTVAIAEEAMKAFGQGRKVLVLTERTDHLDEIASVMNSLKLSPFILHGRLSKKKR 642

Query: 276 AALVIG-DTPTPERDRIIQAFKQQQIKFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQ 334
           A L+ G +   P+  RI+          L    ++  GFD P +D + +  P       Q
Sbjct: 643 AMLISGLNALPPDSPRIL----------LSTGRLIGEGFDHPPLDTLILAMPVSWKGTLQ 692

Query: 335 QIVGRGLRLAAGKSDCLVLDYAGNQY 360
           Q  GR  R   GKSD  ++D+    Y
Sbjct: 693 QYAGRLHREHTGKSDVRIIDFVDTAY 718