Pairwise Alignments

Query, 594 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 72.0 bits (175), Expect = 9e-17
 Identities = 101/437 (23%), Positives = 185/437 (42%), Gaps = 79/437 (18%)

Query: 5   RPYQADSVKAVVHYFRQHSTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAHVKE 59
           R YQ  +V   V          ++V+ TG GK+    ++        A+ R+L LA    
Sbjct: 169 RYYQQIAVNRTVEAVANGQGRILLVMATGTGKTYTAFQIIHRLWKSRAKKRILFLADRTA 228

Query: 60  LVEQN------HAKYEGYGLTGAIFSAGLGRKE----------TDQQV--VFASVQSVVR 101
           L++Q       H K +   +   + S   G++E          T+ +   VF  +   + 
Sbjct: 229 LIDQTRRGDFKHFKDKMTIIKKKVVSRADGKEELVSNNKRGIDTEDKAYEVFLGLYQGLT 288

Query: 102 NLSEFQNQ--------FSLLVIDECHRVPDDKNSSYQKVITHLLELNPGMKVLGLTATPY 153
           N S+ ++         F L+VIDECHR    ++S++++++ +  +       +GLTATP 
Sbjct: 289 NASDIEDAYKDFSPEFFDLIVIDECHRGSAKEDSAWREILRYFNKATH----IGLTATPK 344

Query: 154 RLGMGWIYQYHTRGLVRSEEPRFFRDCIFELPIHYLLDEGFLTPAQLI----DTPVMSYD 209
                      T+ +   E   +F D I+   +   +D+GFL P +++    +     + 
Sbjct: 345 E----------TKEVSNIE---YFGDPIYTYSLKQGIDDGFLAPYRVVRVNLNVDAEGWR 391

Query: 210 FSQLKPANTGR------YRESELD--LVIEQSQRATPQIVAQIIELAKARQGVMIFAATV 261
             Q K    G+      Y   + D  LVI++  +   + + + ++        ++F + +
Sbjct: 392 PEQGKKDKDGKEVEDRVYNRKDFDKTLVIDERTQTVARKLTEFLKGYDRFAKTIVFCSDI 451

Query: 262 RHAEEIYRLLPTEHAALVI----------GDTPTPERDRIIQAFKQQQIKFLVNVS-VLT 310
            HAE +   L   +A LV           GD    +R+       ++    +   S ++T
Sbjct: 452 DHAERMRFALSNLNADLVAKNHKYIMQITGDNDEGKRELDNFINPEETYPVIATTSELMT 511

Query: 311 TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL--AAGKSDCLVLDYAGNQYDLYQPE-- 366
           TG DA    +I +    +S++ ++QIVGRG R+    GK    +LD+  N  DL+  +  
Sbjct: 512 TGVDAQTCRVIVLDAEIKSMTKFKQIVGRGTRINEEFGKMFFTILDFR-NVTDLFADKDF 570

Query: 367 VGDP---KPDSDSEIIT 380
            GDP   KP S+   +T
Sbjct: 571 DGDPIRVKPVSEDTDLT 587