Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., rRNA pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score =  130 bits (328), Expect = 2e-35
 Identities = 98/242 (40%), Positives = 123/242 (50%), Gaps = 23/242 (9%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVT--------VDDVVQKSGAFKLKETSCVEWQGR 52
           M+L K + +    +RK+ TQL +SG +T         DDVV   G  ++ +       G 
Sbjct: 1   MKLVKLIANLGYGSRKDVTQLFRSGRITDADGEVLYADDVVPY-GTIRVDDEPLDPPPG- 58

Query: 53  EITLHGPRYIMMHKPDGVVCSHEDGFNQTALTLLD---EVNIQDLHFAGRLDVDTTGLLL 109
            +TL      MMHKP GV CS +D   +    LL     V    L   GRLD DT+GLLL
Sbjct: 59  -LTL------MMHKPLGVTCSRKDP-GRVVYDLLPPRYRVRTPALSTVGRLDRDTSGLLL 110

Query: 110 ITDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRG-IELRGERELTLPAQLEVI 168
            TDDG   HR+ SPK    K Y   LA  ++ D  E F  G + L  E     PA LEV+
Sbjct: 111 FTDDGALLHRIISPKANVTKVYEATLAQDLRGDEGELFASGTLMLEEETTPLAPAALEVL 170

Query: 169 SETEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVAS 228
                 L + EG+YHQV+RMFAA GN V  L R  IG +TL   L PGE+R L   EVA 
Sbjct: 171 GSRHARLGVSEGRYHQVRRMFAAAGNHVETLQRVSIGALTLG-GLAPGEWRALDAAEVAL 229

Query: 229 IW 230
           I+
Sbjct: 230 IF 231