Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  182 bits (462), Expect = 5e-51
 Identities = 102/230 (44%), Positives = 135/230 (58%), Gaps = 1/230 (0%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP- 59
           MR+D+FL +     RK+   LL    V+VD V       +++  S V      +    P 
Sbjct: 1   MRVDRFLSNLPRFNRKQVRLLLVEQRVSVDGVAVSDPHHEVRAFSRVCVDDEVLQAGKPA 60

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119
           RY M+HKP G V +  D  + T L LLDE +  +LH AGRLD +TTGL+LIT+DGQWS R
Sbjct: 61  RYFMLHKPQGCVSATADPQHPTVLDLLDEPDKDELHIAGRLDFNTTGLMLITNDGQWSRR 120

Query: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHE 179
           +T P+ K  K Y V     I +DYA  F RG+    E   T PA+L ++      L+I E
Sbjct: 121 LTQPQTKLPKVYLVETEQDIGSDYAATFARGLYFAFEDLTTQPAELVLLGPRTARLSIIE 180

Query: 180 GKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           G+YHQVKRMF    NKV+GLHRER+G + LD  L PGEYR LT++E+  +
Sbjct: 181 GRYHQVKRMFGHFDNKVVGLHRERMGPLVLDAALAPGEYRALTDDEIRMV 230