Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., Pseudouridine synthase from Variovorax sp. SCN45

 Score = 73.6 bits (179), Expect = 4e-18
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 55/272 (20%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVE-------WQGRE 53
           +RL+K + +    +R+EA + + +G V V+    + G  K+  +  +E        Q  +
Sbjct: 12  VRLNKRMAELKMCSRREADEWIANGWVKVNGRPAEMGV-KVTPSDRIEIDKAAKGQQANQ 70

Query: 54  ITLHGPRYIMMHKPDGVVCSHEDGFNQTALTLLDEVN---------------IQDLHFAG 98
           +T      I+++KP G V    +  +  A+ L    N               ++ L   G
Sbjct: 71  VT------ILINKPIGYVSGQAEDGHDPAVVLFTPQNRWAEDNARFFFSPQQLRGLAPCG 124

Query: 99  RLDVDTTGLLLITDDGQWSHRVTSPKHKCEKTYRVWLA-------------------DPI 139
           RLD+D+ GLL++T DG+ + ++       EK Y V +A                   DP+
Sbjct: 125 RLDIDSIGLLVMTQDGRIARQLIGEDSVMEKEYLVRVAYHGLGQPAPTGQLVRMDDDDPV 184

Query: 140 QADYAEQFNRGIELRGERELTL------PAQLEVISETEVLLTIHEGKYHQVKRMFAALG 193
             +    F   +  R    L+L      PA++E  +  ++   + EGK  Q++RM   +G
Sbjct: 185 TTNVQAVFPPAMLARLRHGLSLDGQALKPARVEWQNPEQLRFVLTEGKKRQIRRMCELVG 244

Query: 194 NKVIGLHRERIGQITLDETLEPGEYRYLTEEE 225
            KV+GL R RIG++ L   L  G++RYL   E
Sbjct: 245 LKVVGLKRVRIGKVMLG-NLPVGQWRYLAPHE 275