Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., pseudouridine synthase from Variovorax sp. OAS795

 Score = 75.1 bits (183), Expect = 1e-18
 Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 55/272 (20%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVE-------WQGRE 53
           +RL+K + +    +R+EA + +  G V V+    + G  K+  +  +E        Q  +
Sbjct: 9   IRLNKRMAELGLCSRREADEWIAHGWVKVNGKPAEMGV-KVTPSDRIEVDKAAKGQQANQ 67

Query: 54  ITLHGPRYIMMHKPDGVVCSHEDGFNQTALTLLDEVN---------------IQDLHFAG 98
           +T      I+++KP G V +  +  ++ A+TL    N               ++ L   G
Sbjct: 68  VT------ILINKPIGYVSAQAEDGHEPAVTLFTPQNRWAEDNTRFFFSPQQLRGLAPCG 121

Query: 99  RLDVDTTGLLLITDDGQWSHRVTSPKHKCEKTYRVWLA-------------------DPI 139
           RLD+D+ GLL++T DG+ + ++       EK Y V +A                   DP+
Sbjct: 122 RLDIDSIGLLVMTQDGRIARQLIGEDSVMEKEYLVRVAYHGLGQPAPPGQLVRMDDDDPV 181

Query: 140 QADYAEQFNRGIELRGERELTL------PAQLEVISETEVLLTIHEGKYHQVKRMFAALG 193
             +    F   +  R    L+L      PA++E  +  ++   + EGK  Q++RM   +G
Sbjct: 182 TTNVQAVFPPAMLARLRHGLSLDGQPLKPARVEWQNPEQLRFVLTEGKKRQIRRMCELVG 241

Query: 194 NKVIGLHRERIGQITLDETLEPGEYRYLTEEE 225
            KV+GL R RIG++ L   L  G++RYL   E
Sbjct: 242 LKVVGLKRVRIGKVMLG-NLPVGQWRYLAPHE 272