Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

 Score =  175 bits (443), Expect = 8e-49
 Identities = 100/230 (43%), Positives = 129/230 (56%), Gaps = 1/230 (0%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP- 59
           MRLD+FL +     R+    +L    V VD  V       ++E S VE   + +    P 
Sbjct: 1   MRLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDPLTDVREFSRVELDEQLLQAGRPA 60

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119
           RY+M++KP G V +  D  ++T L LL      DLH AGRLD +TTGL+++T+DGQWS R
Sbjct: 61  RYLMLYKPTGCVSATHDPQHRTVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWSRR 120

Query: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHE 179
           +T P  K  K Y V   D I   Y  +F  G     E   T PAQL+++      L I E
Sbjct: 121 LTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHRARLAIVE 180

Query: 180 GKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           G+YHQVKRMF    NKVIGLHRE +G I LD  L PGEYR LT  E+A++
Sbjct: 181 GRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEIATV 230