Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase from Pseudomonas fluorescens SBW25

 Score =  184 bits (467), Expect = 1e-51
 Identities = 102/230 (44%), Positives = 136/230 (59%), Gaps = 1/230 (0%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP- 59
           MR+D+FL +     RK+   LL    V++D V       +++  S V      +    P 
Sbjct: 1   MRVDRFLSNLPRFNRKQVRLLLVERRVSIDGVAVSDPHHEVRTFSRVCVDDEVLQAGKPA 60

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119
           RY M+HKP G V +  D  + T L LLDE +  +LH AGRLD +TTGL+LIT+DGQWS R
Sbjct: 61  RYFMLHKPQGCVSATADPQHPTVLDLLDEPDKDELHIAGRLDFNTTGLMLITNDGQWSRR 120

Query: 120 VTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIHE 179
           +T P+ K  K Y V     I  +YA  F  G+    E   T PA+LE++  T   L+I E
Sbjct: 121 LTQPQTKLPKVYHVETEQDIGPEYATTFAGGLYFAFEDLTTQPAELELLGPTTARLSIIE 180

Query: 180 GKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           G+YHQVKRMF    NKVIGLHRER+G + LD TL PG+YR LT++E+  +
Sbjct: 181 GRYHQVKRMFGHFDNKVIGLHRERMGPLVLDATLAPGQYRALTDDEIRQV 230