Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (348), Expect = 9e-38
 Identities = 86/239 (35%), Positives = 125/239 (52%), Gaps = 10/239 (4%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKS---GAFKLKETSCVEWQGREITLH 57
           M+L   L      TR+  + L++ G V+V +  Q      A   +E      QG     H
Sbjct: 10  MQLQDILFSQGFGTRRICSGLVQQGLVSVGEDTQPCTDPSALFEEEGLVFRVQGELWHYH 69

Query: 58  GPRYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQ-------DLHFAGRLDVDTTGLLLI 110
              Y++++KP G  CS +     +  TLL     Q        +   GRLD DTTGLLL+
Sbjct: 70  ARAYLLLNKPAGYECSQKPSTYPSVYTLLPGPLRQRGGGAAAGVQAVGRLDQDTTGLLLL 129

Query: 111 TDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISE 170
           +DDG++ HR+TSP+H   K Y   +  P+ A    +   G+ L  + +       E +SE
Sbjct: 130 SDDGKFIHRMTSPRHHVPKVYEAQVKHPLDARQVSRLLDGVVLDDDPQPVKAQACEAVSE 189

Query: 171 TEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
             + LT+ EGKYHQVKRM AA+GN+V GLHR  IG + L   L+PG++R+LT  EV ++
Sbjct: 190 LHLRLTLTEGKYHQVKRMVAAVGNRVEGLHRSSIGGLVLSPELKPGQWRWLTAAEVLAL 248