Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 80.9 bits (198), Expect = 3e-20
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 12/237 (5%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLH---- 57
           +L K L  A   +R E  QL+  G ++V+      G  +++    ++  G+ + +     
Sbjct: 41  KLHKVLAQAGMGSRLEMEQLILEGRISVNGEPAHIGQ-RIQFGDVIKVNGKPVRVRMTPP 99

Query: 58  GPRYIMMHKPDGVVCSHEDGFNQ-TALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQW 116
            PR +  HKP G V SH+D  N+ T    L ++        GRLD++T GLLL+T+ G+ 
Sbjct: 100 PPRVLAYHKPAGEVVSHDDPQNRPTVFRRLPKLMQGKWQSVGRLDLNTEGLLLLTNSGEL 159

Query: 117 SHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLE----VISETE 172
           ++R+  P+   ++ Y V +   +  +  ++   G++L  +  +   A +E      +   
Sbjct: 160 ANRLMHPRFGLQREYAVRVLGALSNEEKQRLLDGVKL--DDGVAQFASIEDGGGEGANCW 217

Query: 173 VLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
             +TI EG+  +V+RMF A+G+ V  L R R G + L   L+ G +  L + ++A +
Sbjct: 218 YRVTIGEGRNREVRRMFEAVGHAVSRLIRIRYGAVMLPRGLKRGVWLELDDRDIARL 274