Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., rRNA pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  129 bits (323), Expect = 6e-35
 Identities = 86/233 (36%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR 60
           MRL + + +    ++++   ++K+G VT+ D        K      +   G  +      
Sbjct: 1   MRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKAAHDD-IRVDGEPLDPPPGL 59

Query: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFA---GRLDVDTTGLLLITDDGQWS 117
            +M+HKP+G  CS  D   +    LL E  +         GRLD D+TGLLL+TDDG  +
Sbjct: 60  VLMLHKPEGYTCSTSDP-GRIVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTDDGPLA 118

Query: 118 HRVTSPKHKCEKTYRVWLADPIQADYAEQFNRG-IELRGERELTLPAQLEVISETEVLLT 176
           HR+TSPK    KTY V LA P+  +    F  G + LR E     PA+L V       +T
Sbjct: 119 HRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQTARIT 178

Query: 177 IHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229
           I EG+YHQVKRMFAA+GN V  LHR  IG + L +  E G++R L+  E+A +
Sbjct: 179 ITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDLGDLAE-GQWRPLSPAEIALV 230