Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score = 83.6 bits (205), Expect = 2e-21
 Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 25/180 (13%)

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQWSHR 119
           R I+ +KP  V+    D     A TL D + +  ++ AGRLD D+ GLL++TD G  + R
Sbjct: 3   RLIVFNKPYDVLTQFTDREGGRA-TLKDFIKVPGVYAAGRLDRDSEGLLVLTDSGPLAAR 61

Query: 120 VTSPKHKCEKTYRVWLAD-PIQADYAEQFNRGIELRGERELTLPAQLEVISETEVL---- 174
           ++ PKHK  KTY   +   P +AD  ++  RGI L+     TLPA    ++E + L    
Sbjct: 62  ISDPKHKLAKTYWAQVEGVPTEAD-LDRLRRGIVLKDGP--TLPAGARAMAEPDNLWPRD 118

Query: 175 ---------------LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYR 219
                          LT+ EG+  QV+RM AA+G   + L R  +G+  L E L PGE+R
Sbjct: 119 PPIRYRAAIPTSWIELTLREGRNRQVRRMTAAMGFPTLRLIRWAVGEWNL-EGLAPGEWR 177