Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., rRNA pseudouridine synthase from Fusobacterium nucleatum SB010

 Score =  133 bits (335), Expect = 2e-36
 Identities = 82/228 (35%), Positives = 134/228 (58%), Gaps = 5/228 (2%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETS-CVEWQGREITLHGP 59
           MRLDKFL +    +RKE  +L+ + E+TV+ +   S    + E S  +E+   ++     
Sbjct: 1   MRLDKFLVECGIGSRKEVKKLISNNEITVNGMSNISAKDNIDENSDIIEYNEEKLEYKKF 60

Query: 60  RYIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQ-DLHFAGRLDVDTTGLLLITDDGQWSH 118
           RY +M+K  G + + ED    T + LL E  I+ DL   GRLD DT GLLL T+DG+ +H
Sbjct: 61  RYYIMNKKSGYITATEDFKENTVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGKLNH 120

Query: 119 RVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTIH 178
           ++ SPK+  +K Y V + + I  +   +  +G+++     ++ PA++E IS+ ++ LTI 
Sbjct: 121 KLLSPKNHVDKVYYVEIKNNISDEDIFKLEQGVDI--GNYISQPAKVEKISDNKIYLTIK 178

Query: 179 EGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEV 226
           EGK+HQ+K+M  A+ NKV  L R   G++ L++ L  GE R +  E++
Sbjct: 179 EGKFHQIKKMLEAINNKVCYLKRVSFGRLKLND-LALGEVREVNLEDI 225