Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., Ribosomal large subunit pseudouridine synthase F from Alteromonas macleodii MIT1002

 Score = 87.4 bits (215), Expect = 2e-22
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 13/231 (5%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR- 60
           RL+K++ D    +R+EA +L++   VTV++   + G  K+     V+  G+ +       
Sbjct: 8   RLNKYISDTGLCSRREADKLIEQNRVTVNNQPPELGT-KVGPGDTVKVDGKVVGAVASDK 66

Query: 61  ----YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHF-AGRLDVDTTGLLLITDDGQ 115
               YI+ +KP G+ C+ E         ++D +  ++  F  GRLD  + GL+++T DG 
Sbjct: 67  SDRVYIVYNKPIGITCTTE---RHVKGNIIDAIGHKERIFPVGRLDKPSEGLIILTSDGD 123

Query: 116 WSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLL 175
             +++   ++  +K Y V +  PI   +  + +RG+ + G   +T P  ++   +    +
Sbjct: 124 IVNKILRAENAHDKEYEVTVNQPISERFVNRMSRGVPILG--TVTKPCVVKPTGKNTFTI 181

Query: 176 TIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEV 226
            + +G   Q++RM   LG +V  L R RI  + L  +L+PG++R LT  E+
Sbjct: 182 ILTQGLNRQIRRMCEFLGYEVTKLKRTRIMHLELG-SLKPGQWRNLTSREL 231