Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Ribosomal large subunit pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP-- 59
           +L K L +    +R+E  + ++ G V+VD      G  ++  T+ +   G  ++      
Sbjct: 4   KLQKVLANQGLGSRREMERWIEEGRVSVDGTKATLGD-RVDHTAQIRVDGHLLSRQTEQP 62

Query: 60  --RYIMMHKPDGVVCS-HEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQW 116
             R +M +KP+G +CS H+     T    L  + +      GRLD++T+GLLL T+DG+ 
Sbjct: 63  ICRVLMYNKPEGELCSRHDPEGRDTVFDRLPAIRLGRWITVGRLDMNTSGLLLFTNDGEL 122

Query: 117 SHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELR-GERE-LTLP-AQLEVISETEV 173
           ++R+  PK + E+ Y V +   +         +G+EL  GE + LT+  A     +E E 
Sbjct: 123 ANRLMHPKCEVEREYAVRVFGEVTGKTLHTLQKGVELEDGEAKFLTISGAPTPQHAEDES 182

Query: 174 L-----LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVAS 228
           +     +T+ EG+  +V+R++ + G +V  L R + G I L + L  G +  L  E+V +
Sbjct: 183 MNRWYNVTLKEGRNREVRRLWESQGVQVSRLIRVKYGPIELQKRLPQGAWVELGLEDVNA 242

Query: 229 I 229
           +
Sbjct: 243 L 243