Pairwise Alignments

Query, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., Ribosomal small subunit pseudouridine synthase A from Acinetobacter radioresistens SK82

 Score =  137 bits (345), Expect = 2e-37
 Identities = 84/229 (36%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVV--QKSGAFKLKETSCVEWQGREITLHG 58
           M L+K L      +RK   QL+KSG ++++  +       F LK  +  E  G E     
Sbjct: 1   MLLEKILQSQGFGSRKYCQQLIKSGAISINHEICADTKAKFDLKNFT-FEVHGEEFEYRE 59

Query: 59  PRYIMMHKPDGVVCSHEDGFNQTALTLLDEVNI-QDLHFAGRLDVDTTGLLLITDDGQWS 117
             YI ++KP G  CSH+  ++ +   L D   + + +   GRLD DTTGLLL+TDDGQ+ 
Sbjct: 60  KVYIALNKPQGYECSHQAQYHFSVFDLFDPALLNRGIQCVGRLDQDTTGLLLLTDDGQFL 119

Query: 118 HRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISETEVLLTI 177
             +T P+    K Y +   DPI  +      +G+ELR +  +   + ++  S  ++ L I
Sbjct: 120 QALTHPRKHVAKVYDLITVDPITPEQIRLLEQGVELRND-GIFKASNIKQTSSHQLSLAI 178

Query: 178 HEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEV 226
           H+G YHQVKRM AA+GNKV  LHR +IG++ L   L  GE+ YL + E+
Sbjct: 179 HQGVYHQVKRMLAAVGNKVEKLHRSKIGELEL-PMLAEGEWTYLDQTEI 226