Pairwise Alignments

Query, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  169 bits (429), Expect = 1e-46
 Identities = 118/384 (30%), Positives = 198/384 (51%), Gaps = 34/384 (8%)

Query: 3   ASTVNTQQTPQMSLLLYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYT 62
           A+T   Q+ P   L L  ++   G L   A+ +++PA+P  A + G   GA+Q+T++ Y 
Sbjct: 4   AATPEPQRRPHAPLWLLALVTFSGTL---AMHIFVPALPIAAANLGAGIGAMQMTVSLYI 60

Query: 63  AGFAIGQLLHGPLADSFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAA 122
            G A+GQL++GPLAD FGRRPV+LCG+ ++ +A + +A    + AL   R  Q   G A 
Sbjct: 61  FGLAVGQLVYGPLADRFGRRPVLLCGLAIYCVAGLAAALAPEVHALITARLFQAIGGCAG 120

Query: 123 AVVIQAVVRDMFDREDFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAA 182
            V+ +++VRD  + ++  R ++ + L+VT+ P +AP+IGG LA   GWRSIF+  ALF  
Sbjct: 121 LVLGRSIVRDTAEPQEATRRLALMNLMVTIGPSLAPLIGGALATALGWRSIFY--ALFGL 178

Query: 183 LVIAMVM-WK-IPETLSPENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFL 240
            V+  +  W+ +PET +P     +  R   RNY  L ++P  +G    G  +   M+AF+
Sbjct: 179 GVVGFLFTWRMLPETGAP--GAAVNARDLARNYGKLLRSPAFLGFSVGGGCATTSMYAFI 236

Query: 241 TAGAFVYIDIYGVSPDGFGYLFGLNIVAMIALTTINGRFVKK-------IGSHNMLRFAL 293
            +  F+++D         G    + +  +   + +    + +       I S+ +   A 
Sbjct: 237 ASAPFIFVDQLHRPAHEAGIYLAILVSGVWLGSFLTSHLISRVRVDRLMIRSNALSVAAA 296

Query: 294 FLQLMAGIGLFVSWVLDWGLWGTVPFVV--LFVGTISTIGSNSMGL--LLSKYPRMAGTA 349
           F+ L A +G  +S          VP +V  +F+ T+    ++   L   +S  P++ G+A
Sbjct: 297 FVLLGAALGDHLS----------VPLIVACMFLFTVGAGMASPAALTQAISVNPQVIGSA 346

Query: 350 SSLAGTLRFGTGSIIGAVVAALPG 373
           S L G     T   +GA+  AL G
Sbjct: 347 SGLYGF----TQMAVGALCTALAG 366